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(-) Description

Title :  CRYSTAL STRUCTURE OF PA0076 FROM PSEUDOMONAS AERUGINOSA PAO1 AT 2.05 A RESOLUTION
 
Authors :  E. V. Filippova, M. Chruszcz, T. Skarina, O. Kagan, M. Cymborowski, A. Savchenko, A. M. Edwards, A. Joachimiak, W. Minor, Midwest Center For Structural Genomics (Mcsg)
Date :  19 Jul 07  (Deposition) - 31 Jul 07  (Release) - 06 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Pseudomonas Aeruginosa Pa01, Uncharacterized Protein, Unknown Function, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. V. Filippova, M. Chruszcz, T. Skarina, O. Kagan, M. Cymborowski, A. Savchenko, A. M. Edwards, A. Joachimiak, W. Minor
Crystal Structure Of Pa0076 From Pseudomonas Aeruginosa Pao1 At 2. 05 A Resolution.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PA0076
    Atcc15692
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP11
    Expression System StrainBL21-CODONPLUS(DE3)-RP
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GenePA0076
    Organism ScientificPSEUDOMONAS AERUGINOSA PAO1
    Organism Taxid208964
    StrainPAO1, 1C, PRS 101, LMG 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2MLZ2Mod. Amino AcidN-METHYL-LYSINE
3MSE6Mod. Amino AcidSELENOMETHIONINE
4PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:182 , LEU A:195 , ARG A:197 , HOH A:262 , GLN B:150 , SER B:160 , ALA B:171 , LEU B:172BINDING SITE FOR RESIDUE ACT A 227
2AC2SOFTWAREGLN A:150 , SER A:160 , ALA A:171 , LEU A:172 , HOH A:294 , HIS B:182 , LEU B:195 , ARG B:197BINDING SITE FOR RESIDUE ACT B 227
3AC3SOFTWARELEU A:53 , ALA B:189BINDING SITE FOR RESIDUE ACT A 228
4AC4SOFTWAREVAL A:4 , ALA A:137 , LEU A:139 , HOH A:231BINDING SITE FOR RESIDUE PGE A 229

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QNU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro B:125 -Glu B:126

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QNU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QNU)

(-) Exons   (0, 0)

(no "Exon" information available for 2QNU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:211
 aligned with Q9I756_PSEAE | Q9I756 from UniProtKB/TrEMBL  Length:226

    Alignment length:211
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213 
         Q9I756_PSEAE     4 VGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGE 214
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qnuA00 A:4-214 pa0076 domain                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee........eee..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..eeeee........eeeeeee...........eeeeeee....hhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhh...........eeee...eeee...hhhhhhhhhhhhhhh.eeeeee........eeeeee...hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qnu A   4 VGFYGkLAGRGDFVSRGLPNTFVEPWDAWLASGmRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVmPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLmRYQGLPPAPAFGRFLTGE 214
                                 |  13        23        33   |    43        53        63        73   |    83        93       103       113       123       133       143       153       163       173       183       193  |    203       213 
                                 9-MLZ                      37-MSE                                  77-MSE                                                                                                                196-MSE              

Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q9I756_PSEAE | Q9I756 from UniProtKB/TrEMBL  Length:226

    Alignment length:223
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222   
         Q9I756_PSEAE     3 SVGFYGKLAGRGDFVSRGLPNTFVEPWDAWLASGMRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVMPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPCGPRIEQSLISGNLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLMRYQGLPPAPAFGRFLTGEGEVIPLFPGIP 225
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qnuB00 B:3-225 pa0076 domain                                                                                                                                                                                                   CATH domains
           Pfam domains (1) --DUF2094-2qnuB01 B:5-142                                                                                                                   ----------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --DUF2094-2qnuB02 B:5-142                                                                                                                   ----------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .eeeee........eee..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh...eeeee........eeeeeee...........eeeeeee....hhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhh......-........--........hhhhhhhhhhhhhhh.eeeeee........eeeeee...hhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qnu B   3 SVGFYGkLAGRGDFVSRGLPNTFVEPWDAWLASGmRASQDELGAAWLDAYLTSPLWRFAIAPGLLGGEAVTGVVmPSIDRVGRYFPLTVACLLPANADLGGLVGGDDGWFEQVESLLLSTLEPEAEVEAFEQAVAQLPAPPC-PRIEQSLI--NLLRSEAVTPAQRLAALAQHACDGASHWWGRGSARISAGLmRYQGLPPAPAFGRFLTGEGEVIPLFPGIP 225
                                  | 12        22        32    |   42        52        62        72    |   82        92       102       112       122       132       142 | |   152|  |   162       172       182       192   |   202       212       222   
                                  9-MLZ                      37-MSE                                  77-MSE                                                            144 |    153  |                                     196-MSE                         
                                                                                                                                                                         146       156                                                                     

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QNU)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QNU)

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