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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A PROTEIN OF UNKNOWN FUNCTION FROM ARCHAEOGLOBUS FULGIDUS DSM 4304
 
Authors :  R. Zhang, M. Zhou, M. Gu, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date :  01 Jul 07  (Deposition) - 04 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Archaeoglobus Fulgidus, Structural Genomics, Psi-2, Mcsg, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, M. Zhou, M. Gu, A. Joachimiak
The Crystal Structure Of A Protein Of Unknown Function From Archaeoglobus Fulgidus Dsm 4304.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UPF0215 PROTEIN AF_1433
    Atcc: 49558
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PDM68
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234
    Strain: DSM 4304, VC-16, JCM 9628, NBRC 100126

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2QH9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QH9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QH9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QH9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QH9)

(-) Exons   (0, 0)

(no "Exon" information available for 2QH9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
 aligned with Y1433_ARCFU | O28839 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:178
                               1                                                                                                                                                                              
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167        
          Y1433_ARCFU     - ---MKKWRFLGIDDSFDDRKCCVVGCVTCGGYVEGFLYTEIDIDGLDATDKLISMVRRSKFREQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVMRRKPDMEEFDSAMRNLENYELRRKIVEVAGEIHRIGDIYIQTAGLTPSEAEKLVKASLIKGNMPEPVRISHLVASAIIHG 175
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhh.eeeeeeeee....eeeeeeeee..eeeeeeeeee.....hhhhhhhhhhh.......eeeeee...ee...ee.hhhhhhhhhh..eeeee....hhhhhhhhhh...hhhhhhhhhhhh...eee..eeeeee..hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qh9 A  -2 GNAmKKWRFLGIDDSFDDRKCCVVGCVTCGGYVEGFLYTEIDIDGLDATDKLISmVRRSKFREQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVmRRKPDmEEFDSAmRNLENYELRRKIVEVAGEIHRIGDIYIQTAGLTPSEAEKLVKASLIKGNmPEPVRISHLVASAIIHG 175
                               |     7        17        27        37        47    |   57        67        77        87       |97   |   107|      117       127       137       147       157|      167        
                               |                                                 52-MSE                                     95-MSE |      |                                               158-MSE             
                               1-MSE                                                                                             101-MSE  |                                                                   
                                                                                                                                        108-MSE                                                               


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with Y1433_ARCFU | O28839 from UniProtKB/Swiss-Prot  Length:181

    Alignment length:173
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172   
          Y1433_ARCFU     3 KWRFLGIDDSFDDRKCCVVGCVTCGGYVEGFLYTEIDIDGLDATDKLISMVRRSKFREQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVMRRKPDMEEFDSAMRNLENYELRRKIVEVAGEIHRIGDIYIQTAGLTPSEAEKLVKASLIKGNMPEPVRISHLVASAIIHG 175
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF99-2qh9B01 B:3-175                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) DUF99-2qh9B02 B:3-175                                                                                                                                                         Pfam domains (2)
         Sec.struct. author ..eeeeeeeee....eeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhh.....eeeeee...ee...ee.hhhhhhhhhh..eeeee....hhhhhhhh.....hhhhhhhhhhhhh..eee..eeeeee..hhhhhhhhhhhh......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qh9 B   3 KWRFLGIDDSFDDRKCCVVGCVTCGGYVEGFLYTEIDIDGLDATDKLISmVRRSKFREQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVmRRKPDmEEFDSAmRNLENYELRRKIVEVAGEIHRIGDIYIQTAGLTPSEAEKLVKASLIKGNmPEPVRISHLVASAIIHG 175
                                    12        22        32        42        52        62        72        82        92  |    102     | 112       122       132       142       152     | 162       172   
                                                                            52-MSE                                     95-MSE |      |                                               158-MSE             
                                                                                                                            101-MSE  |                                                                   
                                                                                                                                   108-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QH9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QH9)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF99] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QH9)

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