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Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF SUCCINOGLYCAN BIOSYNTHESIS PROTEIN AT THE RESOLUTION 1.7 A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BCR136.

Authors :   A. P. Kuzin, M. Abashidze, S. Jayaraman, H. Wang, Y. Fang, M. Maglaqui, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   29 Jun 07 (Deposition) - 24 Jul 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Q817Z0, Nesg, X-Ray, Bcr136, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Kuzin, M. Abashidze, S. Jayaraman, H. Wang, Y. Fang, M. Maglaqui, L-C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Succinoglycan Biosynthesis Protein At The Resolution 1. 7 A. Northeast Structural Genomics Consortium Target Bcr136.
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - SUCCINOGLYCAN BIOSYNTHESIS PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	BC_3205
	Organism Scientific	:	BACILLUS CEREUS ATCC 14579
	Organism Taxid	:	226900
	Strain	:	DSM 31

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 11)

No.	Name	Count	Type	Full Name
1	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

(no "Site" information available for 2QGM)

(no "SS Bond" information available for 2QGM)

(no "Cis Peptide Bond" information available for 2QGM)

(no "SAP(SNP)/Variant" information available for 2QGM)

(no "PROSITE Motif" information available for 2QGM)

(no "Exon" information available for 2QGM)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:392
 aligned with Q81BF7_BACCR | Q81BF7 from UniProtKB/TrEMBL  Length:445

    Alignment length:413
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442   
         Q81BF7_BACCR    33 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKMIGNAQYVGLGENTHGSSEIFTMKFRLVKYLVTEMGFTNFAMEEDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAMIEWMKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRPDLLAEVEENYKELSSFTGSIQEYMKLTPKLKEKFKANAERVARLLKDENEQANTEIIPSEYIWAKATASAIEKFTTMLLPNDYPSIIKLHEQYLADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYSEYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEKWVKAKRPLLSIGGQILPNSSVYFDTSLLEQFDIIFHIRKTSPSHIK 445
               SCOP domains d2qgma1 A:33-445 Succinoglycan biosynthesis protein BC3205                                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 2qgmA01 A:33-102,A:303-445 EreA-like (biosynthetic domain)            2qgmA02 A:103-174 EreA-like; domain 2                                   2qgmA03 A:175-301 Biosynthetic Protein domain                                                                                  -2qgmA01 A:33-102,A:303-445 EreA-like (biosynthetic d     omain)                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------Erythro_esteras-2qgmA01 A:108-439                                                                                                                                                                                                                                                                                                           ------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhee.........hhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhhhhhh..eeeeeeehhhhhhhhhhhhhh..hhhhh......hhhhhhhhhhhhhhhhh.......eeeeee....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhh...-----------hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhh...........hhhhhhhhhhh..eeeeeeeeeeeeeee....-----...eeee......hhhhhhhhh...eeeee.hhhhhhhhhhhhheeeee......-----.eeeeehhhhh.eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qgm A  33 SGQSVQKNIVKSIQSQANPLKTIEPSKPFEDLKPLKKmIGNAQYVGLGENTHGSSEIFTmKFRLVKYLVTEmGFTNFAmEEDWGNGLKLNEYIQTGKGNPREFLKLLYPTDEIIAmIEWmKDYNADPSNKKKIQFIGLDLKALDQGSFNKVIDYVRLHRPDLLAEVEENYKELSSFTGSIQEYmKLTPKLKEKFKANAERVARLLKDE-----------EYIWAKATASAIEKFTTmLLPNDYPSIIKLHEQYLADHAmWAQETFGGKTmVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEGNFTLYSEY-----GKITTDTIPQDVKSFNYTLGKVPYKmFLLDNRHLKGQAEKWVKAKRPLLSIGGQI-----VYFDTSLLEQFDIIFHIRKTSPSHIK 445
                                    42        52        62       |72        82        92       102 |     112       122       132       142     | 152       162       172       182       192       202       212   |   222       232       | -       252       262      |272       282       292       302       312       322       332       342       352 |     362       372       382  |    392       402       412 |     422       432       442   
                                                                70-MSE                92-MSE     104-MSE  |                                  148-MSE                                                             216-MSE                 240         252              269-MSE               291-MSE    302-MSE                                             354   360                      385-MSE                      414   420                         
                                                                                                        111-MSE                                  152-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: EreA/ChaN-like (7)

Superfamily: EreA/ChaN-like (7)

Family: EreA-like (3)

Protein domain: Succinoglycan biosynthesis protein BC3205 (1)

Bacillus cereus [TaxId: 1396] (1)

d2qgma1

A:33-445

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Erythro_esteras] (2)

Family: Erythro_esteras (2)

Bacillus cereus (strain ATCC 14579 / DSM 31) (2)

Erythro_esteras-2qgmA01

A:108-439

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q81BF7_BACCR | Q81BF7)

biological process
	GO:0046677		response to antibiotic		Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.

Asymmetric/Biological Unit
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Description

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