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(-) Description

Title :  CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE FROM ESCHERICHIA COLI
 
Authors :  J. I. Yeh, U. Chinte, S. Du
Date :  19 Jun 07  (Deposition) - 15 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Glycerol-3-Phoshate Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. I. Yeh, U. Chinte, S. Du
Structure Of Glycerol-3-Phosphate Dehydrogenase, An Essential Monotopic Membrane Enzyme Involved In Respiration And Metabolism.
Proc. Natl. Acad. Sci. Usa V. 105 3280 2008
PubMed-ID: 18296637  |  Reference-DOI: 10.1073/PNAS.0712331105
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AEROBIC GLYCEROL-3-PHOSPHATE DEHYDROGENASE
    Chains: A, B
    EC Number: 1.1.99.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GLPD, GLYD
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 49)

Asymmetric Unit (7, 49)
No.NameCountTypeFull Name
1BOG6Ligand/IonB-OCTYLGLUCOSIDE
2EDO30Ligand/Ion1,2-ETHANEDIOL
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4IMD2Ligand/IonIMIDAZOLE
5PO42Ligand/IonPHOSPHATE ION
6SO44Ligand/IonSULFATE ION
7TAM3Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 1 (7, 27)
No.NameCountTypeFull Name
1BOG4Ligand/IonB-OCTYLGLUCOSIDE
2EDO15Ligand/Ion1,2-ETHANEDIOL
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4IMD2Ligand/IonIMIDAZOLE
5PO41Ligand/IonPHOSPHATE ION
6SO42Ligand/IonSULFATE ION
7TAM2Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE
Biological Unit 2 (6, 22)
No.NameCountTypeFull Name
1BOG2Ligand/IonB-OCTYLGLUCOSIDE
2EDO15Ligand/Ion1,2-ETHANEDIOL
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4IMD-1Ligand/IonIMIDAZOLE
5PO41Ligand/IonPHOSPHATE ION
6SO42Ligand/IonSULFATE ION
7TAM1Ligand/IonTRIS(HYDROXYETHYL)AMINOMETHANE

(-) Sites  (48, 48)

Asymmetric Unit (48, 48)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:99BINDING SITE FOR RESIDUE BOG A 700
02AC2SOFTWARETRP A:99 , ARG A:102 , ARG A:137 , BOG A:800BINDING SITE FOR RESIDUE BOG A 701
03AC3SOFTWAREHIS A:91 , PRO A:93 , PRO A:97 , ALA A:98 , GLU A:134 , LYS A:136 , BOG A:701BINDING SITE FOR RESIDUE BOG A 800
04AC4SOFTWARELEU A:53 , ARG A:54 , LEU A:56 , GLU A:57 , TYR A:59 , ARG A:96 , ILE A:101 , GLY A:104 , MET A:107BINDING SITE FOR RESIDUE BOG A 801
05AC5SOFTWAREALA B:98 , TRP B:99 , ILE B:103 , ARG B:137 , BOG B:800 , EDO B:820BINDING SITE FOR RESIDUE BOG B 700
06AC6SOFTWARETYR A:59 , ARG A:62 , ARG B:102 , THR B:121 , GLY B:122 , BOG B:700BINDING SITE FOR RESIDUE BOG B 800
07AC7SOFTWAREVAL A:310 , TRP A:311 , TRP A:468 , GLY A:474 , MET A:475BINDING SITE FOR RESIDUE SO4 A 802
08AC8SOFTWAREHIS A:80 , PHE A:83 , ASP A:394 , ARG A:419 , HOH A:1031BINDING SITE FOR RESIDUE SO4 A 803
09AC9SOFTWAREVAL B:310 , TRP B:468 , GLY B:474 , MET B:475BINDING SITE FOR RESIDUE SO4 B 801
10BC1SOFTWAREARG A:161 , HOH A:942 , TYR B:398 , ARG B:401 , LEU B:402 , ARG B:405 , GLU B:426BINDING SITE FOR RESIDUE SO4 B 802
11BC2SOFTWAREARG A:54 , TYR A:55 , ARG A:317 , ARG A:332 , LYS A:354 , HOH A:897 , HOH A:973 , HOH A:989 , HOH A:1057BINDING SITE FOR RESIDUE PO4 A 804
12BC3SOFTWAREARG B:54 , TYR B:55 , ARG B:317 , ARG B:332 , HOH B:908 , HOH B:922 , HOH B:943 , HOH B:1005 , HOH B:1038BINDING SITE FOR RESIDUE PO4 B 803
13BC4SOFTWAREILE A:9 , GLY A:10 , GLY A:11 , GLY A:12 , ILE A:13 , ASN A:14 , GLU A:33 , ALA A:34 , CYS A:39 , ALA A:40 , THR A:41 , SER A:42 , ALA A:44 , SER A:45 , SER A:46 , LYS A:47 , LEU A:48 , HIS A:50 , ALA A:172 , THR A:206 , GLY A:207 , PRO A:208 , PHE A:213 , GLY A:231 , THR A:270 , ARG A:317 , GLY A:353 , LYS A:354 , LEU A:355 , THR A:356 , EDO A:806 , HOH A:824 , HOH A:825 , HOH A:1052BINDING SITE FOR RESIDUE FAD A 600
14BC5SOFTWAREILE B:9 , GLY B:10 , GLY B:12 , ILE B:13 , ASN B:14 , LEU B:32 , GLU B:33 , ALA B:34 , CYS B:39 , ALA B:40 , THR B:41 , SER B:42 , ALA B:44 , SER B:45 , SER B:46 , LYS B:47 , LEU B:48 , HIS B:50 , ALA B:172 , THR B:206 , GLY B:207 , PRO B:208 , GLY B:231 , ARG B:317 , GLY B:353 , LYS B:354 , LEU B:355 , THR B:356 , EDO B:806 , HOH B:821 , HOH B:822 , HOH B:1050BINDING SITE FOR RESIDUE FAD B 600
15BC6SOFTWAREALA A:23 , GLY A:24 , LYS A:162 , HOH A:942 , HOH A:1056 , ARG B:401 , ARG B:404 , HOH B:971BINDING SITE FOR RESIDUE TAM A 805
16BC7SOFTWAREALA A:34 , ARG A:171 , LYS A:280 , FAD A:600BINDING SITE FOR RESIDUE EDO A 806
17BC8SOFTWAREHIS A:444 , GLU A:445 , GLN A:473 , EDO A:811BINDING SITE FOR RESIDUE IMD A 807
18BC9SOFTWARESER A:43 , TRP A:311 , TRP A:468 , EDO A:812 , HOH A:826 , HOH A:832 , HOH A:1034 , HOH A:1035BINDING SITE FOR RESIDUE EDO A 808
19CC1SOFTWAREGLN A:303 , EDO A:815 , HOH A:964 , HOH A:1039 , EDO B:805BINDING SITE FOR RESIDUE EDO A 809
20CC2SOFTWAREARG A:306 , ILE A:309BINDING SITE FOR RESIDUE EDO A 810
21CC3SOFTWAREHIS A:416 , THR A:471 , LYS A:472 , GLN A:473 , TRP A:476 , IMD A:807 , HOH A:872BINDING SITE FOR RESIDUE EDO A 811
22CC4SOFTWARETRP A:311 , TRP A:468 , EDO A:808BINDING SITE FOR RESIDUE EDO A 812
23CC5SOFTWAREGLU A:448BINDING SITE FOR RESIDUE EDO A 813
24CC6SOFTWAREGLU A:440 , ASP A:441BINDING SITE FOR RESIDUE EDO A 814
25CC7SOFTWAREASN A:294 , ASN A:297 , THR A:298 , EDO A:809 , HOH A:928BINDING SITE FOR RESIDUE EDO A 815
26CC8SOFTWAREASN A:294 , HOH A:947 , SER B:305 , ARG B:306 , HOH B:839BINDING SITE FOR RESIDUE EDO A 816
27CC9SOFTWAREARG A:254 , THR A:271 , ASP A:272 , TAM A:823BINDING SITE FOR RESIDUE EDO A 817
28DC1SOFTWAREALA A:40 , THR A:41 , PRO A:279 , LYS A:280 , VAL A:282 , GLY A:315 , VAL A:316 , HOH A:1043BINDING SITE FOR RESIDUE EDO A 818
29DC2SOFTWAREARG A:404 , ALA B:23 , GLY B:24 , HOH B:1025BINDING SITE FOR RESIDUE EDO A 819
30DC3SOFTWAREASP A:397 , ARG A:404 , HOH A:939 , HOH A:969BINDING SITE FOR RESIDUE EDO A 820
31DC4SOFTWAREGLN A:157 , ASN A:424 , LEU A:427 , TYR A:453 , EDO A:822 , HOH A:1066 , HOH B:957BINDING SITE FOR RESIDUE IMD A 821
32DC5SOFTWAREGLN A:157 , HIS A:457 , TRP A:459 , IMD A:821 , HOH A:1063 , ARG B:405BINDING SITE FOR RESIDUE EDO A 822
33DC6SOFTWAREASP A:272 , VAL A:273 , GLU A:274 , GLU A:285 , SER A:287 , GLU A:288 , EDO A:817 , GLU B:285 , SER B:287 , HOH B:924BINDING SITE FOR RESIDUE TAM A 823
34DC7SOFTWAREARG B:254 , THR B:271 , ASP B:272BINDING SITE FOR RESIDUE EDO B 804
35DC8SOFTWAREEDO A:809 , LEU B:293 , ASN B:294 , ASN B:297 , HOH B:860BINDING SITE FOR RESIDUE EDO B 805
36DC9SOFTWAREALA B:34 , TRP B:209 , LYS B:280 , FAD B:600BINDING SITE FOR RESIDUE EDO B 806
37EC1SOFTWARETRP B:311 , TRP B:468 , EDO B:811BINDING SITE FOR RESIDUE EDO B 807
38EC2SOFTWAREMET B:262 , EDO B:817 , HOH B:1030 , HOH B:1033BINDING SITE FOR RESIDUE EDO B 808
39EC3SOFTWAREILE B:289 , ARG B:306BINDING SITE FOR RESIDUE EDO B 809
40EC4SOFTWAREARG A:405 , GLU A:426 , GLN B:157 , VAL B:160 , ARG B:161 , PRO B:387 , ASN B:424 , HIS B:457 , HOH B:1054BINDING SITE FOR RESIDUE TAM B 810
41EC5SOFTWARESER B:43 , ALA B:44 , TRP B:311 , TRP B:468 , EDO B:807 , HOH B:830 , HOH B:833BINDING SITE FOR RESIDUE EDO B 811
42EC6SOFTWAREARG B:88 , ARG B:124 , PHE B:125 , SER B:129 , VAL B:130 , GLN B:242 , HOH B:1000BINDING SITE FOR RESIDUE EDO B 812
43EC7SOFTWAREPRO B:208 , GLN B:212 , LEU B:228 , PRO B:279BINDING SITE FOR RESIDUE EDO B 813
44EC8SOFTWAREVAL B:455 , ASP B:456 , HIS B:457 , GLU B:458 , TRP B:459BINDING SITE FOR RESIDUE EDO B 814
45EC9SOFTWAREILE B:101BINDING SITE FOR RESIDUE EDO B 816
46FC1SOFTWAREHIS B:416 , EDO B:808 , EDO B:819 , HOH B:826 , HOH B:1028BINDING SITE FOR RESIDUE EDO B 817
47FC2SOFTWAREHIS B:444 , GLU B:445 , GLN B:473 , EDO B:817 , HOH B:866BINDING SITE FOR RESIDUE EDO B 819
48FC3SOFTWAREHIS B:91 , PRO B:93 , PRO B:97 , ALA B:98 , BOG B:700BINDING SITE FOR RESIDUE EDO B 820

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QCU)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gly A:269 -Thr A:270
2Arg A:395 -Asp A:396
3Asp A:396 -Asp A:397
4Gly B:269 -Thr B:270
5Asp B:396 -Asp B:397

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QCU)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_G3PDH_1PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.GLPD_ECOLI9-26
 		  2A:9-26
B:9-26
2FAD_G3PDH_2PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2.GLPD_ECOLI352-362
 		  2A:352-362
B:352-362
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_G3PDH_1PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.GLPD_ECOLI9-26
 		  1A:9-26
-
2FAD_G3PDH_2PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2.GLPD_ECOLI352-362
 		  1A:352-362
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_G3PDH_1PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1.GLPD_ECOLI9-26
 		  1-
B:9-26
2FAD_G3PDH_2PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2.GLPD_ECOLI352-362
 		  1-
B:352-362

(-) Exons   (0, 0)

(no "Exon" information available for 2QCU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:499
 aligned with GLPD_ECOLI | P13035 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:499
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         
           GLPD_ECOLI     3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS 501
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...eeee.......hhhhh...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhh..........eeee............eeeeeeeeeehhhhhhhhhhhhhhhh..eee..eeeeeeeee..eeeeeeee.....eeeeee..eee.hhhhhhhhhhhh...........eeeeeeeee.......eeeee.....eeeeeee...eeeee...ee...hhhhh..hhhhhhhhhhhhhhhh....hhhhh.eeeeeee........hhhhh....eeeeeee..eeeeeeee..hhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhh...hhhhhh.......hhhhhhhhhhhh...hhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------FAD_G3PDH_1       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAD_G3PDH_2------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qcu A   3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS 501
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492         


Chain B from PDB  Type:PROTEIN  Length:501
 aligned with GLPD_ECOLI | P13035 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 
           GLPD_ECOLI     1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS 501
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----DAO-2qcuB01 B:5-359                                                                                                                                                                                                                                                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----DAO-2qcuB02 B:5-359                                                                                                                                                                                                                                                                                                                                                ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ..ee.eeee..hhhhhhhhhhhhhh...eeee.......hhhhh...ee..hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee......hhhhhhhhhhhhhh..........eeee............eeeeeeeeeehhhhhhhhhhhhhhhh..eee..eeeeeeeee..eeeeeeee.....eeeeee..eee.hhhhhhhhhhhh...........eeeeeeeee.......eeeee.....eeeeeee...eeeee...ee...hhhhh..hhhhhhhhhhhhhhhh....hhhhh.eeeeeee........hhhhh....eeeeeee..eeeeeeee.....hhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhhhh...hhhhhhhhhhhh..hhhhhhh...hhhhhh.......hhhhhhhhhhhh...hhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------FAD_G3PDH_1       -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FAD_G3PDH_2------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qcu B   1 METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYKGDPKAVKIEESEINYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIEGDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGTVSDLGEDFGHEFYEAELKYLVDHEWVRRADDALWRRTKQGMWLNADQQSRVSQWLVEYTQQRLSLAS 501
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QCU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QCU)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (GLPD_ECOLI | P13035)
molecular function
    GO:0071949    FAD binding    Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0004368    glycerol-3-phosphate dehydrogenase activity    Catalysis of the reaction: sn-glycerol 3-phosphate + a quinone = glycerone phosphate + a quinol.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0052590    sn-glycerol-3-phosphate:ubiquinone oxidoreductase activity    Catalysis of the reaction: sn-glycerol 3-phosphate + a ubiquinone = glycerone phosphate + a ubiquinol.
    GO:0052591    sn-glycerol-3-phosphate:ubiquinone-8 oxidoreductase activity    Catalysis of the reaction: sn-glycerol 3-phosphate + ubiquinone-8 = glycerone phosphate + ubiquinol-8.
biological process
    GO:0019563    glycerol catabolic process    The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
    GO:0006071    glycerol metabolic process    The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
    GO:0046168    glycerol-3-phosphate catabolic process    The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
    GO:0006072    glycerol-3-phosphate metabolic process    The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009331    glycerol-3-phosphate dehydrogenase complex    An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

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        GLPD_ECOLI | P13035: 2r45 2r46 2r4e 2r4j

(-) Related Entries Specified in the PDB File

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