2Q9L - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF IMAZG FROM VIBRIO DAT 722: CTAG-IMAZG (P43212)

Authors :   A. Robinson, A. P. Guilfoyle, S. J. Harrop, Y. Boucher, H. W. Stokes, P. M B. C. Mabbutt

Date :   13 Jun 07 (Deposition) - 09 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Mazg, Vibrio, Ntp-Ppase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Robinson, A. P. Guilfoyle, S. J. Harrop, Y. Boucher, H. W. Stokes, P. M. Curmi, B. C. Mabbutt
A Putative House-Cleaning Enzyme Encoded Within An Integron Array: 1. 8 A Crystal Structure Defines A New Mazg Subtype.
Mol. Microbiol. V. 66 610 2007
PubMed-ID: 17892463 | Reference-DOI: 10.1111/J.1365-2958.2007.05932.X

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B, C, D
	EC Number	:	3.6.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET101
	Expression System Strain	:	BL21(DE3) ROSETTA 2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	IMAZG
	Organism Scientific	:	VIBRIO SP. DAT722
	Organism Taxid	:	344879
	Strain	:	DAT 722
	Synonym	:	MAZG

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	MG	4	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:30 , GLU A:33 , GLU A:58 , ASP A:61	BINDING SITE FOR RESIDUE MG A 501
2	AC2	SOFTWARE	GLU B:30 , GLU B:33 , GLU B:58 , ASP B:61	BINDING SITE FOR RESIDUE MG B 502
3	AC3	SOFTWARE	GLU C:30 , GLU C:33 , GLU C:58 , ASP C:61	BINDING SITE FOR RESIDUE MG C 503
4	AC4	SOFTWARE	GLU D:30 , GLU D:33 , GLU D:58 , ASP D:61	BINDING SITE FOR RESIDUE MG D 504

(no "SS Bond" information available for 2Q9L)

(no "Cis Peptide Bond" information available for 2Q9L)

(no "SAP(SNP)/Variant" information available for 2Q9L)

(no "PROSITE Motif" information available for 2Q9L)

(no "Exon" information available for 2Q9L)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:90
 aligned with Q2F9Z1_9VIBR | Q2F9Z1 from UniProtKB/TrEMBL  Length:94

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
          Q2F9Z1_9VIBR    1 MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
               SCOP domains d2q9la_ A: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2q9l A  1 MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
                                    10        20        30        40        50        60        70        80        90

Chain B from PDB  Type:PROTEIN  Length:90
 aligned with Q2F9Z1_9VIBR | Q2F9Z1 from UniProtKB/TrEMBL  Length:94

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
          Q2F9Z1_9VIBR    1 MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
               SCOP domains d2q9lb_ B: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  2q9l B  1 MKLSELQSHIKEFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
                                    10        20        30        40        50        60        70        80        90

Chain C from PDB  Type:PROTEIN  Length:79
 aligned with Q2F9Z1_9VIBR | Q2F9Z1 from UniProtKB/TrEMBL  Length:94

    Alignment length:79
                                    21        31        41        51        61        71        81         
          Q2F9Z1_9VIBR   12 EFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
               SCOP domains d2q9lc_ C: automated matches                                                    SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  2q9l C 12 EFDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
                                    21        31        41        51        61        71        81

Chain D from PDB  Type:PROTEIN  Length:78
 aligned with Q2F9Z1_9VIBR | Q2F9Z1 from UniProtKB/TrEMBL  Length:94

    Alignment length:78
                                    22        32        42        52        62        72        82        
          Q2F9Z1_9VIBR   13 FDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
               SCOP domains d2q9ld_ D: automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -----MazG-2q9lD01 D:18-90                                                      Pfam domains (1)
           Pfam domains (2) -----MazG-2q9lD02 D:18-90                                                      Pfam domains (2)
           Pfam domains (3) -----MazG-2q9lD03 D:18-90                                                      Pfam domains (3)
           Pfam domains (4) -----MazG-2q9lD04 D:18-90                                                      Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  2q9l D 13 FDYAPEQSEHYFFKLIEEVGELSESIRKGKSGQPTLDELKGSVAEELYDVLYYVCALANIHGVNLEKTHELKEVLNKV 90
                                    22        32        42        52        62        72        82

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: all-alpha NTP pyrophosphatases (26)

Superfamily: all-alpha NTP pyrophosphatases (26)

Family: automated matches (10)

Protein domain: automated matches (10)

Vibrio sp. [TaxId: 344879] (3)

1a	d2q9la_	A:
1b	d2q9lb_	B:
1c	d2q9lc_	C:
1d	d2q9ld_	D:

(no "CATH Domain" information available for 2Q9L)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: MazG (25)

Family: MazG (9)

Vibrio sp. DAT722 (3)

1a	MazG-2q9lD01	D:18-90
1b	MazG-2q9lD02	D:18-90
1c	MazG-2q9lD03	D:18-90
1d	MazG-2q9lD04	D:18-90

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (Q2F9Z1_9VIBR | Q2F9Z1)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2q9l)

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	2q9l
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	3.6.1.19
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UniProtKB/TrEMBL
	Q2F9Z1_9VIBR \| Q2F9Z1	:	2q5z 2q73

2q5z	NTAG-IMAZG (P43212)
2q73	CTAG-IMAZG (P41212)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (1, 1)

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