2Q80 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN GERANYLGERANYL PYROPHOSPHATE SYNTHASE BOUND TO GGPP

Authors :   K. L. Kavanagh, J. E. Dunford, G. Bunkoczi, C. Smee, F. Von Delft, C. Arr J. Weigelt, A. Edwards, M. Sundstrom, U. Oppermann, Structural Geno Consortium (Sgc)

Date :   08 Jun 07 (Deposition) - 19 Jun 07 (Release) - 05 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Isoprenoid Pathway, Isopentenyl Transferase, Structural Genomics, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. L. Kavanagh, J. E. Dunford, G. Bunkoczi, R. G. Russell, U. Oppermann
The Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Reveals A Novel Hexameric Arrangement And Inhibitory Product Binding
J. Biol. Chem. V. 281 22004 2006
PubMed-ID: 16698791 | Reference-DOI: 10.1074/JBC.M602603200

Molecule 1 - GERANYLGERANYL PYROPHOSPHATE SYNTHETASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.5.1.1, 2.5.1.10, 2.5.1.29
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GGPS1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 18)

No.	Name	Count	Type	Full Name
1	GRG	6	Ligand/Ion	GERANYLGERANYL DIPHOSPHATE
2	MG	12	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:64 , ASP A:68 , GLN A:126 , MG A:401 , GRG A:500	BINDING SITE FOR RESIDUE MG A 400
02	AC2	SOFTWARE	ASP A:64 , ASP A:68 , LYS A:202 , MG A:400 , GRG A:500	BINDING SITE FOR RESIDUE MG A 401
03	AC3	SOFTWARE	ASP B:64 , ASP B:68 , GLN B:126 , ASP B:129 , MG B:401 , GRG B:500	BINDING SITE FOR RESIDUE MG B 400
04	AC4	SOFTWARE	ASP B:64 , ASP B:68 , GLU B:210 , MG B:400 , GRG B:500	BINDING SITE FOR RESIDUE MG B 401
05	AC5	SOFTWARE	ASP C:64 , ASP C:68 , GLN C:126 , ASP C:129 , GRG C:500	BINDING SITE FOR RESIDUE MG C 400
06	AC6	SOFTWARE	ASP C:64 , ASP C:68 , GRG C:500	BINDING SITE FOR RESIDUE MG C 401
07	AC7	SOFTWARE	ASP D:64 , ASP D:68 , GLN D:126 , ASP D:129 , GRG D:500	BINDING SITE FOR RESIDUE MG D 400
08	AC8	SOFTWARE	ASP D:64 , ASP D:68 , GRG D:500	BINDING SITE FOR RESIDUE MG D 401
09	AC9	SOFTWARE	ASP E:64 , ASP E:68 , MG E:401 , GRG E:500	BINDING SITE FOR RESIDUE MG E 400
10	BC1	SOFTWARE	ASP E:64 , ASP E:68 , MG E:400 , GRG E:500	BINDING SITE FOR RESIDUE MG E 401
11	BC2	SOFTWARE	ASP F:64 , ASP F:68 , GLN F:126 , ASP F:129 , MG F:401 , GRG F:500	BINDING SITE FOR RESIDUE MG F 400
12	BC3	SOFTWARE	ASP F:64 , ASP F:68 , MG F:400 , GRG F:500	BINDING SITE FOR RESIDUE MG F 401
13	BC4	SOFTWARE	LEU A:31 , SER A:32 , THR A:53 , ASP A:64 , ASP A:68 , ARG A:73 , GLN A:126 , LYS A:151 , LEU A:155 , PHE A:156 , ALA A:159 , VAL A:160 , GLN A:185 , ASP A:188 , LYS A:202 , LYS A:212 , MG A:400 , MG A:401	BINDING SITE FOR RESIDUE GRG A 500
14	BC5	SOFTWARE	SER B:32 , THR B:53 , SER B:60 , ASP B:64 , ASP B:68 , ARG B:73 , GLN B:126 , LYS B:151 , ALA B:159 , GLN B:185 , LYS B:202 , LYS B:212 , MG B:400 , MG B:401	BINDING SITE FOR RESIDUE GRG B 500
15	BC6	SOFTWARE	ARG C:28 , SER C:32 , THR C:53 , HIS C:57 , ASP C:64 , ASP C:68 , ARG C:73 , GLN C:126 , LYS C:151 , PHE C:156 , ALA C:159 , MET C:163 , GLN C:185 , ASP C:188 , LYS C:212 , MG C:400 , MG C:401	BINDING SITE FOR RESIDUE GRG C 500
16	BC7	SOFTWARE	SER D:32 , THR D:53 , ASP D:64 , ASP D:68 , ARG D:73 , GLN D:126 , LYS D:151 , PHE D:156 , ALA D:159 , VAL D:160 , GLN D:185 , ASP D:188 , LYS D:202 , LYS D:212 , MG D:400 , MG D:401	BINDING SITE FOR RESIDUE GRG D 500
17	BC8	SOFTWARE	LEU E:31 , SER E:32 , PHE E:35 , THR E:53 , ASP E:64 , ASP E:68 , ARG E:73 , LYS E:151 , ALA E:159 , GLN E:185 , ASP E:188 , LYS E:202 , LYS E:212 , MG E:400 , MG E:401	BINDING SITE FOR RESIDUE GRG E 500
18	BC9	SOFTWARE	ASP F:64 , ASP F:68 , ARG F:73 , GLN F:126 , LYS F:151 , LEU F:155 , GLN F:185 , ASP F:188 , LYS F:202 , MG F:400 , MG F:401	BINDING SITE FOR RESIDUE GRG F 500

(no "SS Bond" information available for 2Q80)

(no "Cis Peptide Bond" information available for 2Q80)

(no "SAP(SNP)/Variant" information available for 2Q80)

Asymmetric/Biological Unit (2, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	POLYPRENYL_SYNTHASE_1	PS00723	Polyprenyl synthases signature 1.	GGPPS_HUMAN	61-75	6	A:61-75 B:61-75 C:61-75 D:61-75 E:61-75 F:61-75
2	POLYPRENYL_SYNTHASE_2	PS00444	Polyprenyl synthases signature 2.	GGPPS_HUMAN	180-192	6	A:180-192 B:180-192 C:180-192 D:180-192 E:180-192 F:180-192

Asymmetric/Biological Unit (3, 18)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2b	ENST00000358966	2b	ENSE00001509902	chr1:235491753-235491813	61	GGPPS_HUMAN	-	0	0	-	-
1.5a	ENST00000358966	5a	ENSE00002187801	chr1:235498557-235498649	93	GGPPS_HUMAN	1-24	24	6	A:6-24 B:6-24 C:6-24 D:6-24 E:6-24 F:6-24	19 19 19 19 19 19
1.6	ENST00000358966	6	ENSE00001738962	chr1:235505023-235505093	71	GGPPS_HUMAN	24-47	24	6	A:24-47 B:24-47 C:24-47 D:24-47 E:24-47 F:24-47	24 24 24 24 24 24
1.7f	ENST00000358966	7f	ENSE00001758247	chr1:235505326-235507840	2515	GGPPS_HUMAN	48-300	253	6	A:48-296 (gaps) B:48-295 (gaps) C:48-295 (gaps) D:48-295 (gaps) E:48-295 (gaps) F:48-295 (gaps)	249 248 248 248 248 248

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:285
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:291
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295 
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFK 296
               SCOP domains d2q80a1 A:6-296 Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh------...hhhhhhh..hhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY-------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: A:48-296 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                              Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: A:24-47  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 A   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS------KSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFK 296
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |205       215       225       235       245       255       265       275       285       295 
                                                                                                                                                                                                                       195    202

Chain B from PDB  Type:PROTEIN  Length:284
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:290
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
               SCOP domains d2q80b_ B: Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh------...hhhhhhh..hhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: B:48-295 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                             Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: B:24-47  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 B   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS------KSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |205       215       225       235       245       255       265       275       285       295
                                                                                                                                                                                                                       195    202

Chain C from PDB  Type:PROTEIN  Length:284
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:290
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
               SCOP domains d2q80c_ C: Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh------...hhhhhhh..hhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: C:48-295 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                             Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: C:24-47  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 C   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS------KSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |205       215       225       235       245       255       265       275       285       295
                                                                                                                                                                                                                       195    202

Chain D from PDB  Type:PROTEIN  Length:285
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:290
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
               SCOP domains d2q80d_ D: Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh-----....hhhhhhh..hhhhhhhhhhh...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: D:48-295 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                             Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: D:24-47  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 D   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS-----NKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195     | 205       215       225       235       245       255       265       275       285       295
                                                                                                                                                                                                                       195   201

Chain E from PDB  Type:PROTEIN  Length:284
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:290
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
               SCOP domains d2q80e_ E: Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh------...hhhhhhh..hhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: E:48-295 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                             Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: E:24-47  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 E   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS------KSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |205       215       225       235       245       255       265       275       285       295
                                                                                                                                                                                                                       195    202

Chain F from PDB  Type:PROTEIN  Length:284
 aligned with GGPPS_HUMAN | O95749 from UniProtKB/Swiss-Prot  Length:300

    Alignment length:290
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295
          GGPPS_HUMAN     6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
               SCOP domains d2q80f_ F: Geranylgeranyl pyrophosphate synthetase                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------polyprenyl_synt-2q80F01 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (1)
           Pfam domains (2) ------polyprenyl_synt-2q80F02 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (2)
           Pfam domains (3) ------polyprenyl_synt-2q80F03 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (3)
           Pfam domains (4) ------polyprenyl_synt-2q80F04 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (4)
           Pfam domains (5) ------polyprenyl_synt-2q80F05 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (5)
           Pfam domains (6) ------polyprenyl_synt-2q80F06 F:12-265                                                                                                                                                                                                                              ------------------------------ Pfam domains (6)
         Sec.struct. author .hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh------...hhhhhhh..hhhhhhhhhhh...hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------POLYPRENYL_SYNT--------------------------------------------------------------------------------------------------------POLYPRENYL_SY------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a          -----------------------Exon 1.7f  PDB: F:48-295 (gaps) UniProt: 48-300 [INCOMPLETE]                                                                                                                                                                                             Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.6  PDB: F:24-47  -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2q80 F   6 ETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTLGLFFQIRDDYANLHS------KSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMF 295
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195      |205       215       225       235       245       255       265       275       285       295
                                                                                                                                                                                                                       195    202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Terpenoid synthases (196)

Superfamily: Terpenoid synthases (196)

Family: Isoprenyl diphosphate synthases (57)

Protein domain: Geranylgeranyl pyrophosphate synthetase (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d2q80a1	A:6-296
1b	d2q80b_	B:
1c	d2q80c_	C:
1d	d2q80d_	D:
1e	d2q80e_	E:
1f	d2q80f_	F:

(no "CATH Domain" information available for 2Q80)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: polyprenyl_synt] (86)

Family: polyprenyl_synt (86)

Homo sapiens (Human) (19)

1a	polyprenyl_synt-2q80F01	F:12-265
1b	polyprenyl_synt-2q80F02	F:12-265
1c	polyprenyl_synt-2q80F03	F:12-265
1d	polyprenyl_synt-2q80F04	F:12-265
1e	polyprenyl_synt-2q80F05	F:12-265
1f	polyprenyl_synt-2q80F06	F:12-265

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (GGPPS_HUMAN | O95749)

molecular function
	GO:0004161	dimethylallyltranstransferase activity	Catalysis of the reaction: dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate.
	GO:0004311	farnesyltranstransferase activity	Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate + isopentenyl diphosphate = diphosphate + geranylgeranyl diphosphate.
	GO:0004337	geranyltranstransferase activity	Catalysis of the reaction: geranyl diphosphate + isopentenyl diphosphate = 2-trans,6-trans-farnesyl diphosphate + diphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006695	cholesterol biosynthetic process	The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
	GO:0045337	farnesyl diphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of farnesyl diphosphate.
	GO:0033384	geranyl diphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of geranyl diphosphate.
	GO:0033386	geranylgeranyl diphosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of geranylgeranyl diphosphate.
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
	GO:0006720	isoprenoid metabolic process	The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	2q80
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(no "Entries Sharing at Least One Protein Chain" available for 2Q80)

(no "Related Entries Specified in the PDB File" available for 2Q80)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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SAPs(SNPs)/Variants (0, 0)

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Exons (3, 18)

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