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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TRANSCRIPT CLEAVAGE FACTOR, GREB AT 2.6A RESOLUTION
 
Authors :  M. N. Vassylyeva, V. Svetlov, A. D. Dearborn, S. Klyuyev, I. Artsimovitch, D. G. Vassylyev
Date :  13 Mar 07  (Deposition) - 22 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Transcription, Transcript Cleavage, Gre-Factors, Crystal Structure, Rna Polymerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. N. Vassylyeva, V. Svetlov, A. D. Dearborn, S. Klyuyev, I. Artsimovitch, D. G. Vassylyev
The Carboxy-Terminal Coiled-Coil Of The Rna Polymerase Beta'-Subunit Is The Main Binding Site For Gre Factors.
Embo Rep. V. 8 1038 2007
PubMed-ID: 17917675  |  Reference-DOI: 10.1038/SJ.EMBOR.7401079
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION FACTOR GREB
    ChainsA, B, C, D, E, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidBPIA577
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePET28
    GeneGREB
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    StrainDH5ALPHA
    SynonymTRANSCRIPT CLEAVAGE FACTOR GREB

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)A     
Biological Unit 2 (1x) B    
Biological Unit 3 (1x)  C   
Biological Unit 4 (1x)   D  
Biological Unit 5 (1x)    E 
Biological Unit 6 (1x)     F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2P4V)

(-) Sites  (0, 0)

(no "Site" information available for 2P4V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P4V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P4V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P4V)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  6A:17-48
B:17-48
C:17-48
D:17-48
E:17-48
F:17-48
GREB_ECOLI17-48
 
 
 
 
 
  6A:17-48
B:17-48
C:17-48
D:17-48
E:17-48
F:17-48
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  6A:119-135
B:119-135
C:119-135
D:119-135
E:119-135
F:119-135
GREB_ECOLI119-135
 
 
 
 
 
  6A:119-135
B:119-135
C:119-135
D:119-135
E:119-135
F:119-135
Biological Unit 1 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1A:17-48
-
-
-
-
-
GREB_ECOLI17-48
 
 
 
 
 
  1A:17-48
-
-
-
-
-
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1A:119-135
-
-
-
-
-
GREB_ECOLI119-135
 
 
 
 
 
  1A:119-135
-
-
-
-
-
Biological Unit 2 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1-
B:17-48
-
-
-
-
GREB_ECOLI17-48
 
 
 
 
 
  1-
B:17-48
-
-
-
-
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1-
B:119-135
-
-
-
-
GREB_ECOLI119-135
 
 
 
 
 
  1-
B:119-135
-
-
-
-
Biological Unit 3 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1-
-
C:17-48
-
-
-
GREB_ECOLI17-48
 
 
 
 
 
  1-
-
C:17-48
-
-
-
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1-
-
C:119-135
-
-
-
GREB_ECOLI119-135
 
 
 
 
 
  1-
-
C:119-135
-
-
-
Biological Unit 4 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1-
-
-
D:17-48
-
-
GREB_ECOLI17-48
 
 
 
 
 
  1-
-
-
D:17-48
-
-
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1-
-
-
D:119-135
-
-
GREB_ECOLI119-135
 
 
 
 
 
  1-
-
-
D:119-135
-
-
Biological Unit 5 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1-
-
-
-
E:17-48
-
GREB_ECOLI17-48
 
 
 
 
 
  1-
-
-
-
E:17-48
-
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1-
-
-
-
E:119-135
-
GREB_ECOLI119-135
 
 
 
 
 
  1-
-
-
-
E:119-135
-
Biological Unit 6 (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GREAB_1PS00829 Prokaryotic transcription elongation factors signature 1.GREB_ECOL617-48
 
 
 
 
 
  1-
-
-
-
-
F:17-48
GREB_ECOLI17-48
 
 
 
 
 
  1-
-
-
-
-
F:17-48
2GREAB_2PS00830 Prokaryotic transcription elongation factors signature 2.GREB_ECOL6119-135
 
 
 
 
 
  1-
-
-
-
-
F:119-135
GREB_ECOLI119-135
 
 
 
 
 
  1-
-
-
-
-
F:119-135

(-) Exons   (0, 0)

(no "Exon" information available for 2P4V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4va1 A:1-79 automated matches                                               d2p4va2 A:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: A:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v A   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain A from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4va1 A:1-79 automated matches                                               d2p4va2 A:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: A:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v A   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vb1 B:1-79 automated matches                                               d2p4vb2 B:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: B:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v B   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vb1 B:1-79 automated matches                                               d2p4vb2 B:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: B:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v B   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain C from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vc1 C:1-79 automated matches                                               d2p4vc2 C:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: C:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v C   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain C from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vc1 C:1-79 automated matches                                               d2p4vc2 C:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: C:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v C   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vd1 D:1-79 automated matches                                               d2p4vd2 D:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: D:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v D   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vd1 D:1-79 automated matches                                               d2p4vd2 D:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: D:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v D   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4ve1 E:1-79 automated matches                                               d2p4ve2 E:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: E:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v E   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4ve1 E:1-79 automated matches                                               d2p4ve2 E:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: E:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v E   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain F from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOL6 | P64273 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOL6     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vf1 F:1-79 automated matches                                               d2p4vf2 F:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) GreA_GreB_N-2p4vF07 F:1-74                                                -----GreA_GreB-2p4vF01 F:80-155                                                  - Pfam domains (1)
           Pfam domains (2) GreA_GreB_N-2p4vF08 F:1-74                                                -----GreA_GreB-2p4vF02 F:80-155                                                  - Pfam domains (2)
           Pfam domains (3) GreA_GreB_N-2p4vF09 F:1-74                                                -----GreA_GreB-2p4vF03 F:80-155                                                  - Pfam domains (3)
           Pfam domains (4) GreA_GreB_N-2p4vF10 F:1-74                                                -----GreA_GreB-2p4vF04 F:80-155                                                  - Pfam domains (4)
           Pfam domains (5) GreA_GreB_N-2p4vF11 F:1-74                                                -----GreA_GreB-2p4vF05 F:80-155                                                  - Pfam domains (5)
           Pfam domains (6) GreA_GreB_N-2p4vF12 F:1-74                                                -----GreA_GreB-2p4vF06 F:80-155                                                  - Pfam domains (6)
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------GREAB_1  PDB: F:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v F   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

Chain F from PDB  Type:PROTEIN  Length:156
 aligned with GREB_ECOLI | P30128 from UniProtKB/Swiss-Prot  Length:158

    Alignment length:156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      
           GREB_ECOLI     1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
               SCOP domains d2p4vf1 F:1-79 automated matches                                               d2p4vf2 F:80-156 automated matches                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) GreA_GreB_N-2p4vF07 F:1-74                                                -----GreA_GreB-2p4vF01 F:80-155                                                  - Pfam domains (1)
           Pfam domains (2) GreA_GreB_N-2p4vF08 F:1-74                                                -----GreA_GreB-2p4vF02 F:80-155                                                  - Pfam domains (2)
           Pfam domains (3) GreA_GreB_N-2p4vF09 F:1-74                                                -----GreA_GreB-2p4vF03 F:80-155                                                  - Pfam domains (3)
           Pfam domains (4) GreA_GreB_N-2p4vF10 F:1-74                                                -----GreA_GreB-2p4vF04 F:80-155                                                  - Pfam domains (4)
           Pfam domains (5) GreA_GreB_N-2p4vF11 F:1-74                                                -----GreA_GreB-2p4vF05 F:80-155                                                  - Pfam domains (5)
           Pfam domains (6) GreA_GreB_N-2p4vF12 F:1-74                                                -----GreA_GreB-2p4vF06 F:80-155                                                  - Pfam domains (6)
         Sec.struct. author ....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhee...............eeeee......eeee.................hhhhhhh.......eeeee....eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ----------------GREAB_1  PDB: F:17-48           ----------------------------------------------------------------------GREAB_2          --------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p4v F   1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Fold: FKBP-like (309)
2ad2p4va2A:80-156
2bd2p4vb2B:80-156
2cd2p4vc2C:80-156
2dd2p4vd2D:80-156
2ed2p4ve2E:80-156
2fd2p4vf2F:80-156

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P4V)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: FKBP (43)

(-) Gene Ontology  (7, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (GREB_ECOLI | P30128)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0070063    RNA polymerase binding    Interacting selectively and non-covalently with an RNA polymerase molecule or complex.
biological process
    GO:0006352    DNA-templated transcription, initiation    Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription.
    GO:0031439    positive regulation of mRNA cleavage    Any process that activates or increases the frequency, rate or extent of mRNA cleavage.
    GO:0032784    regulation of DNA-templated transcription, elongation    Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,C,D,E,F   (GREB_ECOL6 | P64273)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0070063    RNA polymerase binding    Interacting selectively and non-covalently with an RNA polymerase molecule or complex.
biological process
    GO:0032784    regulation of DNA-templated transcription, elongation    Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2P4V)

(-) Related Entries Specified in the PDB File

1grj GREA TRANSCRIPT CLEAVAGE FACTOR FROM ESCHERICHIA COLI
2etn CRYSTAL STRUCTURE OF THERMUS AQUATICUS GFH1
2eul STRUCTURE OF THE TRANSCRIPTION FACTOR GFH1.
2f23 CRYSTAL STRUCTURE OF GREA FACTOR HOMOLOG 1 (GFH1) PROTEIN OF THERMUS THERMOPHILUS