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(-) Description

Title :  CRYSTAL STRUCTURE OF A CUPIN SUPERFAMILY PROTEIN (DSY2733) FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.60 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  26 Feb 07  (Deposition) - 20 Mar 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Cupin Superfamily Protein, Cupin 2, Conserved Barrel, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Cupin 2, Conserved Barrel (Eat53321. 1) From Desulfitobacterium Hafniense Dcb-2 At 1. 60 A Resolutio
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CUPIN 2, CONSERVED BARREL
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EAT53321.1, DHAF_2995
    Organism Scientific: DESULFITOBACTERIUM HAFNIENSE
    Organism Taxid: 272564
    Strain: DCB-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:11 , GLN B:75 , HOH B:146 , HOH B:154BINDING SITE FOR RESIDUE GOL B 114

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OZJ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ile B:109 -Asp B:110

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:110
 aligned with B8FSC7_DESHD | B8FSC7 from UniProtKB/TrEMBL  Length:113

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
         B8FSC7_DESHD     1 MARLKNLPQERPLPLASLIEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITLID 110
               SCOP domains d2ozja_ A: automated matches                                                                                   SCOP domains
               CATH domains -2ozjA00 A:2-110 Jelly Rolls                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee.........hhhhhh......eeeee.ee...eeeeeeeee.............eeeeeeeeeeeeee..eeeee....eeee......eeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2ozj A   1 mARLKNLPQERPLPLASLIEARENQVLSmALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLmVPAHKIHAIAGKGRFKmLQITLID 110
                            |       10        20        30        40        50        60        70        80     |  90       100  |    110
                            |                          29-MSE                                                   86-MSE          103-MSE   
                            1-MSE                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with B8FSC7_DESHD | B8FSC7 from UniProtKB/TrEMBL  Length:113

    Alignment length:109
                                    11        21        31        41        51        61        71        81        91       101         
         B8FSC7_DESHD     2 ARLKNLPQERPLPLASLIEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITLID 110
               SCOP domains d2ozjb_ B: automated matches                                                                                  SCOP domains
               CATH domains 2ozjB00 B:2-110 Jelly Rolls                                                                                   CATH domains
           Pfam domains (1) --------------------------------------Cupin_2-2ozjB01 B:40-107                                            --- Pfam domains (1)
           Pfam domains (2) --------------------------------------Cupin_2-2ozjB02 B:40-107                                            --- Pfam domains (2)
         Sec.struct. author .ee.........hhhhhh......eeeee.ee...eeeeeeee....eeeee.....eeeeeeeeeeeeee..eeeee....eeee.....eeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2ozj B   2 ARLKNLPQERPLPLASLIEARENQVLSmALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVITFDDQKIDLVPEDVLmVPAHKIHAIAGKGRFKmLQITLID 110
                                    11        21       |31        41        51        61        71        81    |   91       101 |       
                                                      29-MSE                                                   86-MSE          103-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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