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(-) Description

Title :  STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE COMPLEX PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID INTERACTIONS
 
Authors :  M. S. Kumar, M. C. Carson, M. M. Hussain, H. M. K. Murthy
Date :  09 Feb 07  (Deposition) - 06 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  E,F,G,H  (1x)
Biol. Unit 8:  A,B,C,D  (1x)
Biol. Unit 9:  I,J,K,L  (1x)
Keywords :  Apolipoprotein, High Density Lipoproteins, Helix, Apolipoprotein A-Ii, Cholesterol Metabolism X-Ray Diffraction, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. S. Kumar, M. Carson, M. M. Hussain, H. M. K. Murthy
Structures Of Apolipoprotein A-Ii And A Lipid Surrogate Complex Provide Insights Into Apolipoprotein-Lipid Interactions
Biochemistry V. 41 11681 2002
PubMed-ID: 12269810  |  Reference-DOI: 10.1021/BI026069W
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - APOLIPOPROTEIN A-II
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    FragmentRESIDUES 24-100
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)AB          
Biological Unit 2 (1x)  CD        
Biological Unit 3 (1x)    EF      
Biological Unit 4 (1x)      GH    
Biological Unit 5 (1x)        IJ  
Biological Unit 6 (1x)          KL
Biological Unit 7 (1x)    EFGH    
Biological Unit 8 (1x)ABCD        
Biological Unit 9 (1x)        IJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2OU1)

(-) Sites  (0, 0)

(no "Site" information available for 2OU1)

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:6 -B:6
2C:6 -D:6
3E:6 -F:6
4G:6 -H:6
5I:6 -J:6
6K:6 -L:6

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OU1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OU1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OU1)

(-) Exons   (2, 24)

Asymmetric Unit (2, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003679901bENSE00001041701chr1:161193418-16119338534APOA2_HUMAN-00--
1.1gENST000003679901gENSE00002171095chr1:161193215-16119314076APOA2_HUMAN1-18180--
1.1jENST000003679901jENSE00001041702chr1:161192840-161192708133APOA2_HUMAN18-624512A:4-39
B:4-39 (gaps)
C:4-39
D:4-39 (gaps)
E:4-39
F:4-39 (gaps)
G:4-39
H:4-39 (gaps)
I:4-39
J:4-39 (gaps)
K:4-39
L:4-39 (gaps)
36
36
36
36
36
36
36
36
36
36
36
36
1.2fENST000003679902fENSE00001894959chr1:161192312-161192082231APOA2_HUMAN62-1003912A:39-76 (gaps)
B:39-76
C:39-76
D:39-76
E:39-76 (gaps)
F:39-76
G:39-76
H:39-76
I:39-76 (gaps)
J:39-76
K:39-76
L:39-76
38
38
38
38
38
38
38
38
38
38
38
38

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1a_ A: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhh..-hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: A:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: A:39-76 (gaps)         Transcript 1 (2)
                  2ou1 A  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVN-LSYFVELGTQPAT 76
                                    13        23        33        43        53        |-|       73   
                                                                                     62 |            
                                                                                       64            

Chain B from PDB  Type:PROTEIN  Length:71
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou 1b_ B:  Apolipoprotein A-II                                          SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-hhhhhh-hhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: B:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: B:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 B  4 EPCV-SLVSQY-QTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                               | |  13| |     23        33        43        53        63        73   
                               7 9   14 |                                                            
                                       16                                                            

Chain C from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1c_ C: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: C:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: C:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 C  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                                    13        23        33        43        53        63        73   

Chain D from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2o u1d_ D: Apolipoprotein A-II                                           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: D:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: D:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 D  4 EPC-ESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                              | |   13        23        33        43        53        63        73   
                              6 8                                                                    

Chain E from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1e_ E: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhh..-hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: E:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: E:39-76 (gaps)         Transcript 1 (2)
                  2ou1 E  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVN-LSYFVELGTQPAT 76
                                    13        23        33        43        53        |-|       73   
                                                                                     62 |            
                                                                                       64            

Chain F from PDB  Type:PROTEIN  Length:71
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou 1f_ F:  Apolipoprotein A-II                                          SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-hhhhhh-hhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: F:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: F:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 F  4 EPCV-SLVSQY-QTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                               | |  13| |     23        33        43        53        63        73   
                               7 9   14 |                                                            
                                       16                                                            

Chain G from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1g_ G: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: G:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: G:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 G  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                                    13        23        33        43        53        63        73   

Chain H from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2o u1h_ H: Apolipoprotein A-II                                           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: H:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: H:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 H  4 EPC-ESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                              | |   13        23        33        43        53        63        73   
                              6 8                                                                    

Chain I from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1i_ I: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhh..-hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: I:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: I:39-76 (gaps)         Transcript 1 (2)
                  2ou1 I  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVN-LSYFVELGTQPAT 76
                                    13        23        33        43        53        |-|       73   
                                                                                     62 |            
                                                                                       64            

Chain J from PDB  Type:PROTEIN  Length:70
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2o  u1j_ J : Apolipoprotein A-II                                         SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...--hhhhhh-hhhhhhhhhhhhhhhh.....hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: J:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: J:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 J  4 EPC--SLVSQY-QTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                              |  |  13| |     23        33        43        53        63        73   
                              6  9   14 |                                                            
                                       16                                                            

Chain K from PDB  Type:PROTEIN  Length:73
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2ou1k_ K: Apolipoprotein A-II                                            SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: K:4-39 [INCOMPLETE] ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: K:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 K  4 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                                    13        23        33        43        53        63        73   

Chain L from PDB  Type:PROTEIN  Length:72
 aligned with APOA2_HUMAN | P02652 from UniProtKB/Swiss-Prot  Length:100

    Alignment length:73
                                    36        46        56        66        76        86        96   
           APOA2_HUMAN   27 EPCVESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 99
               SCOP domains d2o u1l_ L: Apolipoprotein A-II                                           SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Apo A-II-2ou1L01 L:4-76                                                   Pfam domains (1)
           Pfam domains (2) Apo A-II-2ou1L02 L:4-76                                                   Pfam domains (2)
           Pfam domains (3) Apo A-II-2ou1L03 L:4-76                                                   Pfam domains (3)
           Pfam domains (4) Apo A-II-2ou1L04 L:4-76                                                   Pfam domains (4)
           Pfam domains (5) Apo A-II-2ou1L05 L:4-76                                                   Pfam domains (5)
           Pfam domains (6) Apo A-II-2ou1L06 L:4-76                                                   Pfam domains (6)
           Pfam domains (7) Apo A-II-2ou1L07 L:4-76                                                   Pfam domains (7)
           Pfam domains (8) Apo A-II-2ou1L08 L:4-76                                                   Pfam domains (8)
           Pfam domains (9) Apo A-II-2ou1L09 L:4-76                                                   Pfam domains (9)
          Pfam domains (10) Apo A-II-2ou1L10 L:4-76                                                   Pfam domains (10)
          Pfam domains (11) Apo A-II-2ou1L11 L:4-76                                                   Pfam domains (11)
          Pfam domains (12) Apo A-II-2ou1L12 L:4-76                                                   Pfam domains (12)
         Sec.struct. author ...-hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1j  PDB: L:4-39 (gaps)       ------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------Exon 1.2f  PDB: L:39-76 [INCOMPLETE]   Transcript 1 (2)
                  2ou1 L  4 EPC-ESLVSQYFQTVTDYGKDLMEKVKSPELQAEAKSYFEKSKEQLTPLIKKAGTELVNFLSYFVELGTQPAT 76
                              | |   13        23        33        43        53        63        73   
                              6 8                                                                    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OU1)

(-) Pfam Domains  (1, 12)

Asymmetric Unit

(-) Gene Ontology  (67, 67)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (APOA2_HUMAN | P02652)
molecular function
    GO:0034190    apolipoprotein receptor binding    Interacting selectively and non-covalently with an apolipoprotein receptor.
    GO:0015485    cholesterol binding    Interacting selectively and non-covalently with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0017127    cholesterol transporter activity    Enables the directed movement of cholesterol into, out of or within a cell, or between cells. Cholesterol is the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0008035    high-density lipoprotein particle binding    Interacting selectively and non-covalently with high-density lipoprotein particle, a lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE.
    GO:0070653    high-density lipoprotein particle receptor binding    Interacting selectively and non-covalently with a high-density lipoprotein receptor.
    GO:0055102    lipase inhibitor activity    Stops, prevents or reduces the activity of a lipase, an enzyme that catalyzes of the hydrolysis of a lipid.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0005319    lipid transporter activity    Enables the directed movement of lipids into, out of or within a cell, or between cells.
    GO:0031210    phosphatidylcholine binding    Interacting selectively and non-covalently with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline.
    GO:0060228    phosphatidylcholine-sterol O-acyltransferase activator activity    Increases the activity of phosphatidylcholine-sterol O-acyltransferase, an enzyme that converts cholesterol and phosphatidylcholine (lecithins) to cholesteryl esters and lyso-phosphatidylcholines.
    GO:0005543    phospholipid binding    Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0002526    acute inflammatory response    Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.
    GO:0031100    animal organ regeneration    The regrowth of a lost or destroyed animal organ.
    GO:0033344    cholesterol efflux    The directed movement of cholesterol, cholest-5-en-3-beta-ol, out of a cell or organelle.
    GO:0042632    cholesterol homeostasis    Any process involved in the maintenance of an internal steady state of cholesterol within an organism or cell.
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0030301    cholesterol transport    The directed movement of cholesterol, cholest-5-en-3-beta-ol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0046340    diacylglycerol catabolic process    The chemical reactions and pathways resulting in the breakdown of diacylglycerol, a glyceride in which any two of the R groups (positions not specified) are acyl groups while the remaining R group can be either H or an alkyl group.
    GO:0034380    high-density lipoprotein particle assembly    The non-covalent aggregation and arrangement of proteins and lipids to form a high-density lipoprotein particle.
    GO:0034384    high-density lipoprotein particle clearance    The process in which a high-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.
    GO:0034375    high-density lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a high-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
    GO:0006869    lipid transport    The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0042158    lipoprotein biosynthetic process    The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
    GO:0042157    lipoprotein metabolic process    The chemical reactions and pathways involving any conjugated, water-soluble protein in which the covalently attached nonprotein group consists of a lipid or lipids.
    GO:0034374    low-density lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters from LDL to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride to LDL.
    GO:0060621    negative regulation of cholesterol import    Any process that decreases the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle.
    GO:0032375    negative regulation of cholesterol transport    Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of cholesterol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0060695    negative regulation of cholesterol transporter activity    Any process that decreases the rate, frequency, or extent of cholesterol transporter activity.
    GO:0002740    negative regulation of cytokine secretion involved in immune response    Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine secretion contributing to an immune response.
    GO:0060192    negative regulation of lipase activity    Any process that decreases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid.
    GO:0050995    negative regulation of lipid catabolic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
    GO:0010903    negative regulation of very-low-density lipoprotein particle remodeling    Any process that decreases the rate, frequency or extent of very-low-density lipoprotein particle remodeling. Very-low-density lipoprotein particle remodeling is the acquisition, loss or modification of a protein or lipid within a very-low-density lipoprotein particle, including the hydrolysis of triglyceride by hepatic lipase or lipoprotein lipase and the subsequent loss of free fatty acid.
    GO:0018206    peptidyl-methionine modification    The modification of peptidyl-methionine.
    GO:0006656    phosphatidylcholine biosynthetic process    The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
    GO:0009395    phospholipid catabolic process    The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
    GO:0033700    phospholipid efflux    The directed movement of a phospholipid out of a cell or organelle.
    GO:0043085    positive regulation of catalytic activity    Any process that activates or increases the activity of an enzyme.
    GO:0010873    positive regulation of cholesterol esterification    Any process that increases the frequency, rate or extent of cholesterol esterification. Cholesterol esterification is the lipid modification process in which a sterol ester is formed by the combination of a carboxylic acid (often a fatty acid) and cholesterol. In the blood this process is associated with the conversion of free cholesterol into cholesteryl ester, which is then sequestered into the core of a lipoprotein particle.
    GO:0045416    positive regulation of interleukin-8 biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of interleukin-8.
    GO:0050996    positive regulation of lipid catabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of lipids.
    GO:0018158    protein oxidation    The modification of a protein amino acid by oxidation.
    GO:0030300    regulation of intestinal cholesterol absorption    Any process that modulates the frequency, rate or extent of absorption of cholesterol into the blood, and the exclusion of other sterols from absorption.
    GO:0031647    regulation of protein stability    Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0043627    response to estrogen    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of stimulus by an estrogen, C18 steroid hormones that can stimulate the development of female sexual characteristics.
    GO:0051384    response to glucocorticoid    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
    GO:0009749    response to glucose    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus.
    GO:0001523    retinoid metabolic process    The chemical reactions and pathways involving retinoids, any member of a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
    GO:0043691    reverse cholesterol transport    The directed movement of peripheral cell cholesterol, cholest-5-en-3-beta-ol, towards the liver for catabolism.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0006641    triglyceride metabolic process    The chemical reactions and pathways involving triglyceride, any triester of glycerol. The three fatty acid residues may all be the same or differ in any permutation. Triglycerides are important components of plant oils, animal fats and animal plasma lipoproteins.
    GO:0034370    triglyceride-rich lipoprotein particle remodeling    The acquisition, loss or modification of a protein or lipid within a triglyceride-rich lipoprotein particle, including the hydrolysis of triglyceride by lipoprotein lipase, with the subsequent loss of free fatty acid, and the transfer of cholesterol esters to a triglyceride-rich lipoprotein particle by cholesteryl ester transfer protein (CETP), with the simultaneous transfer of triglyceride from a triglyceride-rich lipoprotein particle.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0042627    chylomicron    A large lipoprotein particle (diameter 75-1200 nm) composed of a central core of triglycerides and cholesterol surrounded by a protein-phospholipid coating. The proteins include one molecule of apolipoprotein B-48 and may include a variety of apolipoproteins, including APOAs, APOCs and APOE. Chylomicrons are found in blood or lymph and carry lipids from the intestines into other body tissues.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005769    early endosome    A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
    GO:0005788    endoplasmic reticulum lumen    The volume enclosed by the membranes of the endoplasmic reticulum.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0034364    high-density lipoprotein particle    A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.
    GO:0034366    spherical high-density lipoprotein particle    A mature high-density lipoprotein (HDL) particle, converted from discoidal HDL particles following the esterification of cholesterol in the particle by phosphatidylcholine-sterol O-acyltransferase (lecithin cholesterol acyltransferase; LCAT).
    GO:0034361    very-low-density lipoprotein particle    A triglyceride-rich lipoprotein particle that is typically composed of APOB100, APOE and APOCs and has a density of about 1.006 g/ml and a diameter of between 20-80 nm. It is found in blood and transports endogenous products (newly synthesized cholesterol and triglycerides) from the liver.

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        APOA2_HUMAN | P026521l6l

(-) Related Entries Specified in the PDB File

1l6l STRUCTURES OF APOLIPOPROTEIN A-II AND A LIPID SURROGATE COMPLEX PROVIDE INSIGHTS INTO APOLIPOPROTEIN-LIPID INTERACTIONS