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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION FROM DUF3224 FAMILY (SO_1590) FROM SHEWANELLA ONEIDENSIS MR-1 AT 1.84 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  25 Jan 07  (Deposition) - 06 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.84
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Np_717203. 1) Fro Shewanella Oneidensis At 1. 84 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_717203.1, SO_1590
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE13Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:49 , ILE A:66 , TYR B:20 , ALA B:21 , LEU B:51BINDING SITE FOR RESIDUE ACT A 141
2AC2SOFTWARETYR A:20 , ALA A:21 , LEU A:51 , GLY B:48 , GLU B:49 , ILE B:66BINDING SITE FOR RESIDUE ACT B 141

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OOJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OOJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OOJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OOJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2OOJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with Q8EGL1_SHEON | Q8EGL1 from UniProtKB/TrEMBL  Length:140

    Alignment length:133
                                    11        21        31        41        51        61        71        81        91       101       111       121       131   
         Q8EGL1_SHEON     2 EMTKVTGKFDVKLTPENAYATGVGGVNLGRMALDKTFYGELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISIENGQHFYEFSFCFEP 134
               SCOP domains d2ooja1 A:2-134 Hypothetical protein SO1590                                                                                           SCOP domains
               CATH domains 2oojA00 A:2-134 SO1590-like                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee..........eeeeeeeeeee...eeeeeeeeeeeee......eeeeeeeeeeeee..eeeeeeeeeeeee..--.eeeeee.....ee....eeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ooj A   2 EmTKVTGKFDVKLTPENAYATGVGGVNLGRmALDKTFYGELEARSQGEmLSAmTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGImTD--NRLHLEVVPHSGAGELTGLYGTmAISIENGQHFYEFSFCFEP 134
                             |      11        21        31|       41        51  |     61        71        81      | |- |     101       111   |   121       131   
                             |                           32-MSE            50-MSE                                88-MSE3                   115-MSE               
                             3-MSE                                             54-MSE                              90                                            


Chain B from PDB  Type:PROTEIN  Length:135
 aligned with Q8EGL1_SHEON | Q8EGL1 from UniProtKB/TrEMBL  Length:140

    Alignment length:135
                                    10        20        30        40        50        60        70        80        90       100       110       120       130     
         Q8EGL1_SHEON     1 MEMTKVTGKFDVKLTPENAYATGVGGVNLGRMALDKTFYGELEARSQGEMLSAMTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGIMTDGQNRLHLEVVPHSGAGELTGLYGTMAISIENGQHFYEFSFCFEPA 135
               SCOP domains d2oojb_ B: Hypothetical protein SO1590                                                                                                  SCOP domains
               CATH domains -2oojB00 B:2-135 SO1590-like                                                                                                            CATH domains
           Pfam domains (1) DUF3224-2oojB01 B:1-135                                                                                                                 Pfam domains (1)
           Pfam domains (2) DUF3224-2oojB02 B:1-135                                                                                                                 Pfam domains (2)
         Sec.struct. author ...eeeeeeeeeeeeee..........eeeeeeeeeee...eeeeeeeeeeeee......eeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeee.....ee....eeeeeeeeee..eeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ooj B   1 mEmTKVTGKFDVKLTPENAYATGVGGVNLGRmALDKTFYGELEARSQGEmLSAmTAVKGSAGYVAIEQVVGKLCGRQGSFVLQHFGImTDGQNRLHLEVVPHSGAGELTGLYGTmAISIENGQHFYEFSFCFEPA 135
                            | |     10        20        30 |      40        50   |    60        70        80       |90       100       110    |  120       130     
                            1-MSE                         32-MSE            50-MSE                                88-MSE                    115-MSE                
                              3-MSE                                             54-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF3224] (2)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8EGL1_SHEON | Q8EGL1)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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