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(-) Description

Title :  CRYSTAL STRUCTURE OF INLA S192N/HEC1 COMPLEX
 
Authors :  T. Wollert, D. W. Heinz, W. D. Schubert
Date :  23 Jan 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Leucine-Rich-Repeat, Invasion Protein, Ig-Like Domain, Adhesion Protein, Cell Invasion-Cell Adhesion Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Wollert, B. Pasche, M. Rochon, S. Deppenmeier, J. Van Den Heuvel, A. D. Gruber, D. W. Heinz, A. Lengeling, W. D. Schubert
Extending The Host Range Of Listeria Monocytogenes By Rational Protein Design.
Cell(Cambridge, Mass. ) V. 129 891 2007
PubMed-ID: 17540170  |  Reference-DOI: 10.1016/J.CELL.2007.03.049

(-) Compounds

Molecule 1 - INTERNALIN-A
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPGEX
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentINTERNALIN DOMAIN
    GeneINLA
    MutationYES
    Organism ScientificLISTERIA MONOCYTOGENES
    Organism Taxid169963
    StrainEGD-E
 
Molecule 2 - EPITHELIAL-CADHERIN
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPGEX
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    FragmentN-TERMINAL DOMAIN OF HUMAN E-CADHERIN
    GeneCDH1, CDHE, UVO
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CL4Ligand/IonCHLORIDE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:326 , HOH A:1107 , HOH A:1147 , HOH A:1274 , HOH B:951 , HOH B:960BINDING SITE FOR RESIDUE CA A 901
2AC2SOFTWAREASN A:325 , HOH A:915 , LYS B:25BINDING SITE FOR RESIDUE CL A 903
3AC3SOFTWARESER A:389 , ALA A:390 , GLY A:391 , GLY A:411 , HOH B:936BINDING SITE FOR RESIDUE CL A 904
4AC4SOFTWARELYS A:56 , GLN A:82BINDING SITE FOR RESIDUE CL A 905
5AC5SOFTWAREASN A:384 , ARG B:55 , HOH B:911 , HOH B:928BINDING SITE FOR RESIDUE CL A 906
6AC6SOFTWAREGLU B:11 , ASP B:67 , GLU B:69 , HOH B:982 , HOH B:1009BINDING SITE FOR RESIDUE CA B 902

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OMY)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Gly A:194 -Asn A:195
2Glu A:455 -Pro A:456
3Gly B:15 -Pro B:16
4Phe B:17 -Pro B:18
5Pro B:46 -Pro B:47

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (17, 17)

Asymmetric/Biological Unit (17, 17)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_001307T193PCADH1_HUMANUnclassified  ---BT39P
02UniProtVAR_INLA_LISMO_003 *T51AINLA_LISMO  ---  ---AT51A
03UniProtVAR_008712D244GCADH1_HUMANDisease (HDGC)  ---BD90G
04UniProtVAR_INLA_LISMO_004 *V94LINLA_LISMO  ---  ---AV94L
05UniProtVAR_INLA_LISMO_005 *N118DINLA_LISMO  ---  ---AN118D
06UniProtVAR_INLA_LISMO_006 *T142SINLA_LISMO  ---  ---AT142S
07UniProtVAR_INLA_LISMO_007 *S187NINLA_LISMO  ---  ---AS187N
08UniProtVAR_INLA_LISMO_008 *F193LINLA_LISMO  ---  ---AF193L
09UniProtVAR_INLA_LISMO_009 *L253WINLA_LISMO  ---  ---AL253W
10UniProtVAR_INLA_LISMO_010 *S292PINLA_LISMO  ---  ---AS292P
11UniProtVAR_INLA_LISMO_011 *S292RINLA_LISMO  ---  ---AS292R
12UniProtVAR_INLA_LISMO_012 *N321SINLA_LISMO  ---  ---AN321S
13UniProtVAR_INLA_LISMO_013 *N381SINLA_LISMO  ---  ---AN381S
14UniProtVAR_INLA_LISMO_014 *A416EINLA_LISMO  ---  ---AA416E
15UniProtVAR_INLA_LISMO_015 *T454AINLA_LISMO  ---  ---AT454A
16UniProtVAR_INLA_LISMO_016 *S474NINLA_LISMO  ---  ---AS474N
17UniProtVAR_INLA_LISMO_017 *P476SINLA_LISMO  ---  ---AP476S
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 18)

Asymmetric/Biological Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.INLA_LISM499-120
77-98
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
  15A:99-120
A:77-98
A:121-142
A:143-164
A:165-186
A:188-207
A:208-229
A:230-251
A:252-273
A:274-295
A:296-317
A:318-339
A:340-361
A:362-383
A:384-405
INLA_LISMO99-120
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
  14A:99-120
A:121-142
A:143-164
A:165-186
A:187-207
A:208-229
A:230-251
A:252-273
A:274-295
A:296-317
A:318-339
A:340-361
A:362-383
A:384-405
2CADHERIN_2PS50268 Cadherins domain profile.CADH1_HUMAN180-262
263-375
376-486
487-595
594-702
  1B:26-101
-
-
-
-
3CADHERIN_1PS00232 Cadherin domain signature.CADH1_HUMAN250-260
363-373
583-593
  1B:96-101
-
-

(-) Exons   (3, 3)

Asymmetric/Biological Unit (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002617691aENSE00001859184chr16:68771128-68771366239CADH1_HUMAN1-16160--
1.2ENST000002617692ENSE00000844392chr16:68772200-68772314115CADH1_HUMAN17-55390--
1.3bENST000002617693bENSE00000946584chr16:68835573-68835796224CADH1_HUMAN55-129750--
1.4bENST000002617694bENSE00000946585chr16:68842327-68842470144CADH1_HUMAN130-177481B:-3-23 (gaps)32
1.5ENST000002617695ENSE00000946586chr16:68842596-68842751156CADH1_HUMAN178-229521B:24-7552
1.6ENST000002617696ENSE00000946587chr16:68844100-68844244145CADH1_HUMAN230-278491B:76-10126
1.7ENST000002617697ENSE00000946588chr16:68845587-68845762176CADH1_HUMAN278-336590--
1.8ENST000002617698ENSE00000946589chr16:68846038-68846166129CADH1_HUMAN337-379430--
1.9ENST000002617699ENSE00000946590chr16:68847216-68847398183CADH1_HUMAN380-440610--
1.11ENST0000026176911ENSE00002191003chr16:68849418-68849662245CADH1_HUMAN441-522820--
1.12ENST0000026176912ENSE00001694152chr16:68853183-68853328146CADH1_HUMAN522-571500--
1.13ENST0000026176913ENSE00001754940chr16:68855904-68856128225CADH1_HUMAN571-646760--
1.14ENST0000026176914ENSE00001721514chr16:68857302-68857529228CADH1_HUMAN646-722770--
1.15ENST0000026176915ENSE00001736533chr16:68862077-68862207131CADH1_HUMAN722-765440--
1.16ENST0000026176916ENSE00001782571chr16:68863557-68863700144CADH1_HUMAN766-813480--
1.17bENST0000026176917bENSE00001930498chr16:68867193-688694372245CADH1_HUMAN814-882690--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:461
 aligned with INLA_LISM4 | G2K3G6 from UniProtKB/Swiss-Prot  Length:800

    Alignment length:461
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495 
           INLA_LISM4    36 ATITQDTPINQIFTDAALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQINFSNNQLTDITPLKDLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTNLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYAEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 496
               SCOP domains d2omya2 A:36-416 Internalin A                                                                                                                                                                                                                                                                                                                                                                d2omya1 A:417-496 Internalin A                                                   SCOP domains
               CATH domains 2omyA01 A:36-414 Ribonuclease Inhibitor                                                                                                                                                                                                                                                                                                                                                    2omyA02 A:415-496  [code=2.60.40.1220, no name defined]                            CATH domains
           Pfam domains (1) Internalin_N-2omyA12    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA01 A:360-403                     -----------------------------------LRR_adjacent-2omyA13 A:439-496                             Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA02 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA03 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA04 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA05 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA06 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA07 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA08 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA09 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA10 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA11 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (11)
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhh...eee..........hhhhh....eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eeeeeeeee..hhhhh......eeeeee....hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee...eeee..........eee..............ee.hhheee..eee........eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ---------------A------------------------------------------L-----------------------D-----------------------S--------------------------------------------N-----L-----------------------------------------------------------W--------------------------------------P----------------------------S-----------------------------------------------------------S----------------------------------E-------------------------------------A-------------------N-S-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                PROSITE (2) ---------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:188-207  LRR  PDB: A:208-229   LRR  PDB: A:230-251   LRR  PDB: A:252-273   LRR  PDB: A:274-295   LRR  PDB: A:296-317   LRR  PDB: A:318-339   LRR  PDB: A:340-361   LRR  PDB: A:362-383   LRR  PDB: A:384-405   ------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -----------------------------------------LRR  PDB: A:77-98     -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2omy A  36 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 496
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495 

Chain A from PDB  Type:PROTEIN  Length:461
 aligned with INLA_LISMO | P0DJM0 from UniProtKB/Swiss-Prot  Length:800

    Alignment length:461
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495 
           INLA_LISMO    36 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 496
               SCOP domains d2omya2 A:36-416 Internalin A                                                                                                                                                                                                                                                                                                                                                                d2omya1 A:417-496 Internalin A                                                   SCOP domains
               CATH domains 2omyA01 A:36-414 Ribonuclease Inhibitor                                                                                                                                                                                                                                                                                                                                                    2omyA02 A:415-496  [code=2.60.40.1220, no name defined]                            CATH domains
           Pfam domains (1) Internalin_N-2omyA12    ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA01 A:360-403                     -----------------------------------LRR_adjacent-2omyA13 A:439-496                             Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA02 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA03 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA04 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA05 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA06 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA07 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA08 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (8)
           Pfam domains (9) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA09 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (9)
          Pfam domains (10) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA10 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (10)
          Pfam domains (11) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_4-2omyA11 A:360-403                     --------------------------------------------------------------------------------------------- Pfam domains (11)
         Sec.struct. author ......eehhhhh.hhhhhhhhhhhh.......eehhhhhh...eee..........hhhhh....eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eeeeeeeee..hhhhh......eeeeee....hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee........hhhhh......eee........hhhhhhh....eee........hhhhhhh....eee........hhhhhhh....eee........hhhhh......eee...eeee..........eee..............ee.hhheee..eee........eeeeeeeeeeee..eeeeeeeeeeee... Sec.struct. author
             SAPs(SNPs) (1) ---------------A------------------------------------------L-----------------------D-----------------------S--------------------------------------------N-----L-----------------------------------------------------------W--------------------------------------P----------------------------S-----------------------------------------------------------S----------------------------------E-------------------------------------A-------------------N-S-------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------LRR  PDB: A:99-120    LRR  PDB: A:121-142   LRR  PDB: A:143-164   LRR  PDB: A:165-186   LRR  PDB: A:187-207  LRR  PDB: A:208-229   LRR  PDB: A:230-251   LRR  PDB: A:252-273   LRR  PDB: A:274-295   LRR  PDB: A:296-317   LRR  PDB: A:318-339   LRR  PDB: A:340-361   LRR  PDB: A:362-383   LRR  PDB: A:384-405   ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2omy A  36 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPLKA 496
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495 

Chain B from PDB  Type:PROTEIN  Length:105
 aligned with CADH1_HUMAN | P12830 from UniProtKB/Swiss-Prot  Length:882

    Alignment length:110
                                   155       165       175       185       195       205       215       225       235       245       255
          CADH1_HUMAN   146 SPGLRRQKRDWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 255
               SCOP domains d2 om    yb_ B: E-cadherin (epithelial)                                                                        SCOP domains
               CATH domains 2o my    B00 B:-3-101 Cadherins                                                                                CATH domains
               Pfam domains -------------Cadherin-2omyB01 B:5-99                                                                        -- Pfam domains
         Sec.struct. author ..-..----.ee...eeee........eeeee.ee.hhhh..eeeeeee..........eee.....eeee..........eeeeeeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------P--------------------------------------------------G----------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) ----------------------------------CADHERIN_2  PDB: B:26-101 UniProt: 180-262                                   PROSITE (3)
                PROSITE (4) --------------------------------------------------------------------------------------------------------CADHER PROSITE (4)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------- PROSITE (1)
               Transcript 1 Exon 1.4b  PDB: B:-3-23 (gaps)  Exon 1.5  PDB: B:24-75 UniProt: 178-229             Exon 1.6  PDB: B:76-101    Transcript 1
                 2omy B  -3 GP-LG----SWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQ 101
                             | ||    1        11        21        31        41        51        61        71        81        91       101
                             | ||    1                                                                                                    
                            -2 ||                                                                                                         
                              -1|                                                                                                         
                                0                                                                                                         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (4, 14)

Asymmetric/Biological Unit
(-)
Clan: E-set (290)
(-)
Clan: LRR (77)
(-)
Family: LRR_4 (28)
2aLRR_4-2omyA01A:360-403
2bLRR_4-2omyA02A:360-403
2cLRR_4-2omyA03A:360-403
2dLRR_4-2omyA04A:360-403
2eLRR_4-2omyA05A:360-403
2fLRR_4-2omyA06A:360-403
2gLRR_4-2omyA07A:360-403
2hLRR_4-2omyA08A:360-403
2iLRR_4-2omyA09A:360-403
2jLRR_4-2omyA10A:360-403
2kLRR_4-2omyA11A:360-403

(-) Gene Ontology  (50, 53)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (INLA_LISM4 | G2K3G6)
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A   (INLA_LISMO | P0DJM0)
cellular component
    GO:0005618    cell wall    The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B   (CADH1_HUMAN | P12830)
molecular function
    GO:0032794    GTPase activating protein binding    Interacting selectively and non-covalently with a GTPase activating protein.
    GO:0030506    ankyrin binding    Interacting selectively and non-covalently with ankyrin, a 200 kDa cytoskeletal protein that attaches other cytoskeletal proteins to integral membrane proteins.
    GO:0008013    beta-catenin binding    Interacting selectively and non-covalently with the beta subunit of the catenin complex.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0050839    cell adhesion molecule binding    Interacting selectively and non-covalently with a cell adhesion molecule.
    GO:0045295    gamma-catenin binding    Interacting selectively and non-covalently with the gamma subunit of the catenin complex.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0034332    adherens junction organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0071681    cellular response to indole-3-methanol    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indole-3-methanol stimulus.
    GO:0071285    cellular response to lithium ion    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lithium (Li+) ion stimulus.
    GO:0090002    establishment of protein localization to plasma membrane    The directed movement of a protein to a specific location in the plasma membrane.
    GO:0022617    extracellular matrix disassembly    A process that results in the breakdown of the extracellular matrix.
    GO:0030198    extracellular matrix organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
    GO:0007156    homophilic cell adhesion via plasma membrane adhesion molecules    The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell.
    GO:0022408    negative regulation of cell-cell adhesion    Any process that stops, prevents or reduces the rate or extent of cell adhesion to another cell.
    GO:0031175    neuron projection development    The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
    GO:0021983    pituitary gland development    The progression of the pituitary gland over time from its initial formation until its mature state. The pituitary gland is an endocrine gland that secretes hormones that regulate many other glands.
    GO:0042993    positive regulation of transcription factor import into nucleus    Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus.
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0072659    protein localization to plasma membrane    A process in which a protein is transported to, or maintained in, a specific location in the plasma membrane.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0010033    response to organic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
    GO:0009636    response to toxic substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
    GO:0016337    single organismal cell-cell adhesion    The attachment of one cell to another cell via adhesion molecules, where both cells are part of the same organism.
    GO:0007416    synapse assembly    The aggregation, arrangement and bonding together of a set of components to form a synapse. This process ends when the synapse is mature (functional).
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0016235    aggresome    An inclusion body formed by dynein-dependent retrograde transport of an aggregated protein on microtubules.
    GO:0043296    apical junction complex    A functional unit located near the cell apex at the points of contact between epithelial cells, which in vertebrates is composed of the tight junction, the zonula adherens, and desmosomes and in some invertebrates, such as Drosophila, is composed of the subapical complex (SAC), the zonula adherens and the septate junction. Functions in the regulation of cell polarity, tissue integrity and intercellular adhesion and permeability.
    GO:0016342    catenin complex    Complex of peripheral cytoplasmic proteins (alpha-, beta- and gamma-catenin) that interact with the cytoplasmic region of uvomorulin/E-cadherin to connect it to the actin cytoskeleton.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005913    cell-cell adherens junction    An adherens junction which connects a cell to another cell.
    GO:0030864    cortical actin cytoskeleton    The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0009898    cytoplasmic side of plasma membrane    The leaflet the plasma membrane that faces the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016600    flotillin complex    A protein complex that contains flotillin-1 and flotillin-2, and may contain associated proteins. Flotillins associate into membrane microdomains resembling caveolae.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
    GO:0016328    lateral plasma membrane    The portion of the plasma membrane at the lateral side of the cell. In epithelial cells, lateral plasma membranes are on the sides of cells which lie at the interface of adjacent cells.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CADH1_HUMAN | P128301o6s 2o72 2omt 2omu 2omv 2omx 2omz 3ff7 3ff8 3l6x 3l6y 4zt1 4zte
        INLA_LISM4 | G2K3G61o6s 1o6t 1o6v 2omt 2omu 2omv 2omw 2omx 2omz
        INLA_LISMO | P0DJM01o6s 1o6t 1o6v 2omt 2omu 2omv 2omw 2omx 2omz

(-) Related Entries Specified in the PDB File

1o6s