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(-) Description

Title :  PROTEIN OF UNKNOWN FUNCTION (DUF964) FROM BACILLUS STEAROTHERMOPHILUS
 
Authors :  Y. Kim, R. Wu, F. Collart, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  31 Dec 06  (Deposition) - 30 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Helix Bundle, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, R. Wu, F. Collart, A. Joachimiak
Crystal Structure Of The Protein Of Unknown Function From Bacillus Stearothermophilus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN OF UNKNOWN FUNCTION, DUF964
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 28)

Asymmetric/Biological Unit (1, 28)
No.NameCountTypeFull Name
1MSE28Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2OEQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OEQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OEQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OEQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OEQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2OEQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with Y640_GEOKA | Q5L2A5 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:113
                                    12        22        32        42        52        62        72        82        92       102       112   
           Y640_GEOKA     3 EPLHALAKQLEQAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLQLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSMTIAEVQQIAMKPLEELHRSF 115
               SCOP domains d2oeqa1 A:3-115 YheA-like protein                                                                                 SCOP domains
               CATH domains 2oeqA00 A:3-115 YheA/YmcA-like domains                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2oeq A   3 EPLHALARQLEQAIRASEPFQQLKRAYEDVRRDETAYRmFANVRDIQLRLHEKQmRGAAILPDEIEQAQKAmALAQQNEKLARLmALEQQmSITIAEVQQIAmKPLEELHRSF 115
                                    12        22        32        42        52    |   62        72 |      82    |   92|      102  |    112   
                                                                 41-MSE          57-MSE           74-MSE       87-MSE |         105-MSE      
                                                                                                                     93-MSE                  


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with Y640_GEOKA | Q5L2A5 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:114
                                    12        22        32        42        52        62        72        82        92       102       112    
           Y640_GEOKA     3 EPLHALAKQLEQAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLQLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSMTIAEVQQIAMKPLEELHRSFM 116
               SCOP domains d2oeqb_ B: automated matches                                                                                       SCOP domains
               CATH domains 2oeqB00 B:3-115 YheA/YmcA-like domains                                                                           - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2oeq B   3 EPLHALARQLEQAIRASEPFQQLKRAYEDVRRDETAYRmFANVRDIQLRLHEKQmRGAAILPDEIEQAQKAmALAQQNEKLARLmALEQQmSITIAEVQQIAmKPLEELHRSFm 116
                                    12        22        32        42        52    |   62        72 |      82    |   92|      102  |    112   |
                                                                 41-MSE          57-MSE           74-MSE       87-MSE |         105-MSE    116-MSE
                                                                                                                     93-MSE                   


Chain C from PDB  Type:PROTEIN  Length:117
 aligned with Y640_GEOKA | Q5L2A5 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:117
                                    11        21        31        41        51        61        71        81        91       101       111       
           Y640_GEOKA     2 SEPLHALAKQLEQAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLQLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSMTIAEVQQIAMKPLEELHRSFMEG 118
               SCOP domains d2oeqc_ C: automated matches                                                                                          SCOP domains
               CATH domains 2oeqC00 C:2-118 YheA/YmcA-like domains                                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2oeq C   2 SEPLHALARQLEQAIRASEPFQQLKRAYEDVRRDETAYRmFANVRDIQLRLHEKQmRGAAILPDEIEQAQKAmALAQQNEKLARLmALEQQmSITIAEVQQIAmKPLEELHRSFmEG 118
                                    11        21        31        41        51     |  61        71  |     81     |  91 |     101   |   111    |  
                                                                  41-MSE          57-MSE           74-MSE       87-MSE |         105-MSE    116-MSE
                                                                                                                      93-MSE                     


Chain D from PDB  Type:PROTEIN  Length:116
 aligned with Y640_GEOKA | Q5L2A5 from UniProtKB/Swiss-Prot  Length:119

    Alignment length:116
                                    10        20        30        40        50        60        70        80        90       100       110      
           Y640_GEOKA     1 MSEPLHALAKQLEQAIRASEPFQQLKRAYEDVRRDETAYRMFANVRDIQLQLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSMTIAEVQQIAMKPLEELHRSFM 116
               SCOP domains d2oeqd_ D: automated matches                                                                                         SCOP domains
               CATH domains -2oeqD00 D:2-115 YheA/YmcA-like domains                                                                            - CATH domains
           Pfam domains (1) ---DUF964-2oeqD01 D:4-111                                                                                      ----- Pfam domains (1)
           Pfam domains (2) ---DUF964-2oeqD02 D:4-111                                                                                      ----- Pfam domains (2)
           Pfam domains (3) ---DUF964-2oeqD03 D:4-111                                                                                      ----- Pfam domains (3)
           Pfam domains (4) ---DUF964-2oeqD04 D:4-111                                                                                      ----- Pfam domains (4)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 2oeq D   1 mSEPLHALARQLEQAIRASEPFQQLKRAYEDVRRDETAYRmFANVRDIQLRLHEKQmRGAAILPDEIEQAQKAmALAQQNEKLARLmALEQQmSITIAEVQQIAmKPLEELHRSFm 116
                            |       10        20        30        40|       50      | 60        70   |    80      | 90  |    100    |  110     |
                            |                                      41-MSE          57-MSE           74-MSE       87-MSE |         105-MSE    116-MSE
                            1-MSE                                                                                      93-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF964] (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2OEQ)

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