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Title :   YHEA FROM BACILLUS SUBTILIS

Authors :   T. A. Binkowski, M. Borovilos, J. Abdullah, A. Joachimiak, Midwest Ce Structural Genomics (Mcsg)

Date :   29 Dec 06 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.96

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (2x)
Biol. Unit 2: B  (2x)

Keywords :   Yhea, Mcsg, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. A. Binkowski, M. Borovilos, J. Abdullah, A. Joachimiak
Yhea From Bacillus Subtilis
To Be Published
PubMed: search

Molecule 1 - UPF0342 PROTEIN YHEA
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	YHEA
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Strain	:	168

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A
Biological Unit 2 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 10)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (1, 10)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	MSE	10	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:81 , HOH A:120 , HOH A:151 , HOH A:155 , GLU B:13	BINDING SITE FOR RESIDUE CA A 118
2	AC2	SOFTWARE	GLU A:13 , GLU B:81 , HOH B:123	BINDING SITE FOR RESIDUE CA B 118

(no "SS Bond" information available for 2OEE)

Asymmetric Unit

No.	Residues
1	Gln A:71	-	Lys A:72

(no "SAP(SNP)/Variant" information available for 2OEE)

(no "PROSITE Motif" information available for 2OEE)

(no "Exon" information available for 2OEE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:92
 aligned with YHEA_BACSU | O07542 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:110
                                    12        22        32        42        52        62        72        82        92       102       112
           YHEA_BACSU     3 VNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKIIMKPLEELY 112
               SCOP domains d2oeea1 A:3-112 Hypothetical protein YheA                                                                      SCOP domains
               CATH domains 2oeeA00 A:3-112 YheA/YmcA-like domains                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2oee A   3 VNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRmFENFRDVQL------------------QAQKTVALVQQHEKISQLmEAEQRmSmLIGELNKIImKPLEELY 112
                                    12        22        32        42       | -         -      | 72        82    |   92| |    102  |    112
                                                                 41-MSE   50                 69                87-MSE | |       105-MSE   
                                                                                                                     93-MSE               
                                                                                                                       95-MSE

Chain B from PDB  Type:PROTEIN  Length:93
 aligned with YHEA_BACSU | O07542 from UniProtKB/Swiss-Prot  Length:117

    Alignment length:110
                                    12        22        32        42        52        62        72        82        92       102       112
           YHEA_BACSU     3 VNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKIIMKPLEELY 112
               SCOP domains d2oeeb_ B: Hypothetical protein YheA                                                                           SCOP domains
               CATH domains 2oeeB00 B:3-112 YheA/YmcA-like domains                                                                         CATH domains
           Pfam domains (1) -DUF964-2oeeB01 B:4-111                                                                                      - Pfam domains (1)
           Pfam domains (2) -DUF964-2oeeB02 B:4-111                                                                                      - Pfam domains (2)
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-----------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2oee B   3 VNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRmFENFRDVQLR-----------------QAQKTVALVQQHEKISQLmEAEQRmSmLIGELNKIImKPLEELY 112
                                    12        22        32        42        |-         -      | 72        82    |   92| |    102  |    112
                                                                 41-MSE    51                69                87-MSE | |       105-MSE   
                                                                                                                     93-MSE               
                                                                                                                       95-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: YheA-like (5)

Superfamily: YheA/YmcA-like (5)

Family: YheA-like (4)

Protein domain: Hypothetical protein YheA (1)

Bacillus subtilis [TaxId: 1423] (1)

1a	d2oeea1	A:3-112
1b	d2oeeb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: YheA-like fold (4)

Homologous Superfamily: YheA/YmcA-like domains (4)

Bacillus subtilis. Organism_taxid: 1423. Strain: 168. (2)

1a	2oeeB00	B:3-112
1b	2oeeA00	A:3-112

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: DUF964] (3)

Family: DUF964 (3)

Bacillus subtilis (2)

1a	DUF964-2oeeB01	B:4-111
1b	DUF964-2oeeB02	B:4-111

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2OEE)

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Description

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