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(-) Description

Title :  STRUCTURE OF BACTERIOPHAGE HK97 TAIL ASSEMBLY CHAPERONE
 
Authors :  T. E. Mcgrath, A. Tuite, D. Bona, V. Saridakis, A. M. Edwards, K. Maxwell N. Y. Chirgadze
Date :  18 Dec 06  (Deposition) - 18 Dec 07  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Keywords :  Bacteriophage Hk97, Morphogenesis, Tail Assembly Chaperone, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. G. Pell, N. Cumby, T. E. Clark, A. Tuite, K. P. Battaile, A. M. Edwards N. Y. Chirgadze, A. R. Davidson, K. L. Maxwell
A Conserved Spiral Structure For Highly Diverged Phage Tail Assembly Chaperones.
J. Mol. Biol. V. 425 2436 2013
PubMed-ID: 23542344  |  Reference-DOI: 10.1016/J.JMB.2013.03.035

(-) Compounds

Molecule 1 - TAIL ASSEMBLY CHAPERONE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: P11 (MODIFIED PET VECTOR)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HK97P121
    Organism Scientific: ENTEROBACTERIA PHAGE HK97
    Organism Taxid: 37554

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2OB9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OB9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OB9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OB9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OB9)

(-) Exons   (0, 0)

(no "Exon" information available for 2OB9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:107
 aligned with Q9MCS5_BPHK7 | Q9MCS5 from UniProtKB/TrEMBL  Length:224

    Alignment length:114
                                    11        21        31        41        51        61        71        81        91       101       111    
         Q9MCS5_BPHK7     2 SQTLKQLAMAKMAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVKGGGDDENVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLIN 115
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh.......eeeee.hhhh..eeeee..hhhhhhhhhhhh-------..hhhhhhhhhhhhhhhhhhhhee........hhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2ob9 A   2 SQTLKQLAmAKmAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVV-------NVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLIN 115
                                    11 |      21        31        41      |  -    |   61        71        81        91       101       111    
                                   10-MSE                                48      56                                                           
                                      13-MSE                                                                                                  


Chain A from PDB  Type:PROTEIN  Length:107
 aligned with Q9MCS6_BPHK7 | Q9MCS6 from UniProtKB/TrEMBL  Length:128

    Alignment length:114
                                    11        21        31        41        51        61        71        81        91       101       111    
         Q9MCS6_BPHK7     2 SQTLKQLAMAKMAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVKGGGDDENVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLIN 115
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhh.......eeeee.hhhh..eeeee..hhhhhhhhhhhh-------..hhhhhhhhhhhhhhhhhhhhee........hhhhhhhhhh..hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 2ob9 A   2 SQTLKQLAmAKmAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVV-------NVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLIN 115
                                    11 |      21        31        41      |  -    |   61        71        81        91       101       111    
                                   10-MSE                                48      56                                                           
                                      13-MSE                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with Q9MCS5_BPHK7 | Q9MCS5 from UniProtKB/TrEMBL  Length:224

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
         Q9MCS5_BPHK7     1 MSQTLKQLAMAKMAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVKGGGDDENVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLINNAD 118
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Phage_TAC-2ob9B01 B:1-118                                                                                              Pfam domains (1)
           Pfam domains (2) Phage_TAC-2ob9B02 B:1-118                                                                                              Pfam domains (2)
         Sec.struct. author hhhhhhhhhhh......eeeee.hhhh..eeeee..hhhhhhhhhhhhh--------------hhhhhhhhhhhhhhee........hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2ob9 B   1 mSQTLKQLAmAKmAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVK--------------HRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLINNAD 118
                            |       10  |     20        30        40        |-         -   |    70        80        90       100       110        
                            1-MSE   10-MSE                                 49             64                                                      
                                       13-MSE                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with Q9MCS6_BPHK7 | Q9MCS6 from UniProtKB/TrEMBL  Length:128

    Alignment length:118
                                    10        20        30        40        50        60        70        80        90       100       110        
         Q9MCS6_BPHK7     1 MSQTLKQLAMAKMAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVKGGGDDENVSVSEKAHRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLINNAD 118
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Phage_TAC-2ob9B01 B:1-118                                                                                              Pfam domains (1)
           Pfam domains (2) Phage_TAC-2ob9B02 B:1-118                                                                                              Pfam domains (2)
         Sec.struct. author hhhhhhhhhhh......eeeee.hhhh..eeeee..hhhhhhhhhhhhh--------------hhhhhhhhhhhhhhee........hhhhhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2ob9 B   1 mSQTLKQLAmAKmAGFRHKTVVVPEWEGVKVVLREPSGEAWLRWQEVVK--------------HRNLCADVVLFIDVLCDTDKQPVFSVDEEEQVREIYGPVHSRLLKQALDLINNAD 118
                            |       10  |     20        30        40        |-         -   |    70        80        90       100       110        
                            1-MSE   10-MSE                                 49             64                                                      
                                       13-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OB9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OB9)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: Phage_TAC] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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