2O6Q - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURAL DIVERSITY OF THE HAGFISH VARIABLE LYMPHOCYTE RECEPTORS A29

Authors :   J. O. Lee, H. M. Kim, S. C. Oh

Date :   08 Dec 06 (Deposition) - 26 Dec 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A

Keywords :   Leucine-Rich Repeat Protein, Lrr, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. M. Kim, S. C. Oh, K. J. Lim, J. Kasamatsu, J. Y. Heo, B. S. Park, H. Lee, O. J. Yoo, M. Kasahara, J. O. Lee
Structural Diversity Of The Hagfish Variable Lymphocyte Receptors
J. Biol. Chem. V. 282 6726 2007
PubMed-ID: 17192264 | Reference-DOI: 10.1074/JBC.M608471200
(for further references see the PDB file header)

Molecule 1 - VARIABLE LYMPHOCYTE RECEPTOR A
	Chains	:	A
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	HI5
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PVL1393
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	LEUCINE-RICH REPEAT (LRR), RESIDUES 23-292
	Gene	:	VLRA
	Organism Common	:	INSHORE HAGFISH
	Organism Scientific	:	EPTATRETUS BURGERI
	Organism Taxid	:	7764
	Synonym	:	VARIABLE LYMPHOCYTE RECEPTOR A29

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2O6Q)

(no "Site" information available for 2O6Q)

Asymmetric/Biological Unit

No.	Residues
1	A:27	-	A:36
2	A:34	-	A:45
3	A:241	-	A:269

(no "Cis Peptide Bond" information available for 2O6Q)

(no "SAP(SNP)/Variant" information available for 2O6Q)

(no "PROSITE Motif" information available for 2O6Q)

(no "Exon" information available for 2O6Q)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:270
 aligned with Q32R26_EPTBU | Q32R26 from UniProtKB/TrEMBL  Length:371

    Alignment length:270
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292
         Q32R26_EPTBU    23 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAASDCVSPN 292
               SCOP domains d2o6qa_ A: automated matches                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-2o6qA01 A:179-238                                     ------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-2o6qA02 A:179-238                                     ------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-2o6qA03 A:179-238                                     ------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-2o6qA04 A:179-238                                     ------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------------------------------------------------------------LRR_8-2o6qA05 A:179-238                                     ------------------------------------------------------ Pfam domains (5)
         Sec.struct. author ....hhhhh...eee....eee..................eee.....................eee.....................eee.....................eee.....................eee.....................eee.....................eee.....................eee............hhhhhhhhhhhhhh...............hhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2o6q A  23 NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEKGGKAVLEITEKDAASDCVSPN 292
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) (112)

Superfamily: L domain-like (93)

Family: automated matches (23)

Protein domain: automated matches (23)

Inshore hagfish (Eptatretus burgeri) [TaxId: 7764] (2)

d2o6qa_

(no "CATH Domain" information available for 2O6Q)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: LRR (77)

Family: LRR_8 (41)

Eptatretus burgeri (Inshore hagfish) (3)

1a	LRR_8-2o6qA01	A:179-238
1b	LRR_8-2o6qA02	A:179-238
1c	LRR_8-2o6qA03	A:179-238
1d	LRR_8-2o6qA04	A:179-238
1e	LRR_8-2o6qA05	A:179-238

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q32R26_EPTBU | Q32R26)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric/Biological Unit
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2o6r	INSHORE HAGFISH VARIABLE LYMPHOCYTE RECEPTOR B61
2o6s	INSHORE HAGFISH VARIABLE LYMPHOCYTE RECEPTOR B59

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (1, 1)

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Pfam Domains (1, 5)

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