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(-) Description

Title :  CRYSTAL STRUCTURE OF CUTA FROM THE PHYTOPATHGEN BACTERIUM XYLELLA FASTIDIOSA
 
Authors :  F. J. Medrano, C. E. Benedetti
Date :  09 Nov 06  (Deposition) - 03 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.39
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (3x)
Keywords :  Cuta, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. J. Medrano, C. E. Benedetti
Crystal Structure Of Cuta From The Phytopathgen Bacterium Xylella Fastidiosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET29A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CUTA
    Organism Scientific: XYLELLA FASTIDIOSA
    Organism Taxid: 160492
    Strain: 9A5C

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1IMD2Ligand/IonIMIDAZOLE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1IMD2Ligand/IonIMIDAZOLE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1IMD6Ligand/IonIMIDAZOLE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:68 , ILE A:71 , LEU A:77 , GLY A:93BINDING SITE FOR RESIDUE IMD A 200
2AC2SOFTWAREILE A:20 , ARG A:81 , GLU A:96BINDING SITE FOR RESIDUE IMD A 201

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:104
 aligned with Q9PFN8_XYLFA | Q9PFN8 from UniProtKB/TrEMBL  Length:112

    Alignment length:104
                                    12        22        32        42        52        62        72        82        92       102    
         Q9PFN8_XYLFA     3 SDVYLIFSTCPDLPSAEIISRVLVQERLAACVTQLPGAVSTYRWQGKIETTQEIQLLIKTNAVHVNAAITRLCALHPYRLPEAIAVQVSVGLPEYLTWINTEID 106
               SCOP domains d2nuha_ A: Cut A1                                                                                        SCOP domains
               CATH domains 2nuhA00 A:3-106  [code=3.30.70.830, no name defined]                                                     CATH domains
               Pfam domains --CutA1-2nuhA01 A:5-106                                                                                  Pfam domains
         Sec.struct. author ..eeeeeeee.hhhhhhhhhhhhhhh....eeeeeeeeeeeee....eeeeeeeeeeeeee..hhhhhhhhhhhhh.......eeee....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2nuh A   3 SDVYLIFSTCPDLPSAEIISRVLVQERLAACVTQLPGAVSTYRWQGKIETTQEIQLLIKTNAVHVNAAITRLCALHPYRLPEAIAVQVSVGLPEYLTWINTEID 106
                                    12        22        32        42        52        62        72        82        92       102
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: GlnB-like (50)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9PFN8_XYLFA | Q9PFN8)
biological process
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.

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