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(-) Description

Title :  THE NMR SOLUTION STRUCTURE OF OCTYL-TRIDECAPTIN A1 IN DPC MICELLES
 
Authors :  S. A. Cochrane, B. Findlay, A. Bakhtiary, J. Z. Acedo, E. M. Rodriguez-L J. C. Vederas
Date :  01 Aug 15  (Deposition) - 28 Sep 16  (Release) - 26 Oct 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Tridecaptin A1, Lipopeptide, Antimicrobial, Antibiotic, Non- Ribosomal, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Cochrane, B. Findlay, A. Bakhtiary, J. Z. Acedo, E. M. Rodriguez-Lopez, P. Mercier, J. C. Vederas
Antimicrobial Lipopeptide Tridecaptin A1 Selectively Binds To Gram-Negative Lipid Ii.
Proc. Natl. Acad. Sci. Usa V. 113 11561 2016
PubMed-ID: 27688760  |  Reference-DOI: 10.1073/PNAS.1608623113

(-) Compounds

Molecule 1 - OCTYL-TRIDECAPTIN A1
    Chains: A
    Engineered: YES
    Other Details: FMOC-SPPS SYNTHESIS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

NMR Structure (4, 5)
No.NameCountTypeFull Name
128J1Mod. Amino AcidD-ALLOISOLEUCINE
24FO2Mod. Amino Acid(2R)-2,4-DIAMINOBUTANOIC ACID
34N31Mod. Amino AcidN-OCTANOYL-D-VALINE
4DAB1Mod. Amino Acid2,4-DIAMINOBUTYRIC ACID
NMR Structure * (4, 5)
No.NameCountTypeFull Name
128J1Mod. Amino AcidD-ALLOISOLEUCINE
24FO2Mod. Amino Acid(2R)-2,4-DIAMINOBUTANOIC ACID
34N31Mod. Amino AcidN-OCTANOYL-D-VALINE
4DAB1Mod. Amino Acid2,4-DIAMINOBUTYRIC ACID

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author ............. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  2n5w A  1 xxGSWSaxFEVxA 13
                            ||    ||10 | 
                            ||    ||   | 
                            1-4N3 ||   | 
                             2-4FO||   | 
                                  7-DAB| 
                                   8-4FO 
                                      12-28J
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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