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(-) Description

Title :  MYRISTOYLATED T41I/T78I MUTANT OF M-PMV MATRIX PROTEIN
 
Authors :  T. Kroupa, R. Hrabal
Date :  27 Jun 16  (Deposition) - 27 Jul 16  (Release) - 30 Nov 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (30x)
NMR Structure *:  A  (1x)
Keywords :  Matrix Protein, M-Pmv, Retrovirus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kroupa, H. Langerova, M. Dolezal, J. Prchal, V. Spiwok, E. Hunter, M. Rumlova, R. Hrabal, T. Ruml
Membrane Interactions Of The Mason-Pfizer Monkey Virus Matrix Protein And Its Budding Deficient Mutants.
J. Mol. Biol. V. 428 4708 2016
PubMed-ID: 27725181  |  Reference-DOI: 10.1016/J.JMB.2016.10.010

(-) Compounds

Molecule 1 - MYRISTOYLATED M-PMV MATRIX PROTEIN MUTANT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: GAG
    Mutation: YES
    Organism Common: MPMV
    Organism Scientific: MASON-PFIZER MONKEY VIRUS
    Organism Taxid: 11855
    Synonym: CORE POLYPROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure (30x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1MYR1Ligand/IonMYRISTIC ACID
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1MYR1Ligand/IonMYRISTIC ACID

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:2 , HIS A:8 , LYS A:33 , ILE A:51 , LYS A:93 , GLN A:98binding site for residue MYR A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LDL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LDL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LDL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LDL)

(-) Exons   (0, 0)

(no "Exon" information available for 5LDL)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ldl A   2 GQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDICPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVIAFSYWNLIKELIDKKEVNPQVMAAVAQTEEILKSNSQTDLEHHHHHH 125
                                    11        21        31        41        51        61        71        81        91       101       111       121
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LDL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LDL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LDL)

(-) Gene Ontology  (14, 14)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAG_MPMV | P07567: 1bax 1cl4 2kgf 2lpy 2mv4 4ard 5lmy

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LDL)