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(-) Description

Title :  XANTHINE AND 8-OXOGUANINE IN G-QUADRUPLEXES: FORMATION OF A G G X O TETRAD
 
Authors :  V. V. Cheong, B. Heddi, C. J. Lech, A. T. Phan
Date :  04 Dec 14  (Deposition) - 14 Oct 15  (Release) - 06 Jul 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
NMR Structure *:  A  (1x)
Keywords :  Xanthosine, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  V. V. Cheong, B. Heddi, C. J. Lech, A. T. Phan
Xanthine And 8-Oxoguanine In G-Quadruplexes: Formation Of A Ggxo Tetrad.
Nucleic Acids Res. V. 43 10506 2015
PubMed-ID: 26400177  |  Reference-DOI: 10.1093/NAR/GKV826

(-) Compounds

Molecule 1 - DNA (5'-D(*TP*TP*GP*GP*GP*TP*TP*AP*(8OG) P*GP*GP*TP*TP*AP*GP*GP*(3ZO)P*TP*TP*AP*GP*GP*GP*A)-3')
    ChainsA
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  1
NMR Structure (10x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
13ZO1Mod. Nucleotide2'-DEOXY-XANTHOSINE-5'-MONOPHOSPHATE
28OG1Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
NMR Structure * (2, 2)
No.NameCountTypeFull Name
13ZO1Mod. Nucleotide2'-DEOXY-XANTHOSINE-5'-MONOPHOSPHATE
28OG1Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:24
                                                       
                  2mwz A  1 TTGGGTTAgGGTTAGGxTTAGGGA 24
                                    10      | 20    
                                    9-8OG  17-3ZO   

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(-) Related Entries Specified in the PDB File

2gku UNMODIFIED G-QUADRUPLEX REFERENCE RELATED ID: 25378 RELATED DB: BMRB