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(-) Description

Title :  NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 IN MEMBRANE MIMICKING MICELLES
 
Authors :  S. Elaid, S. Libersou, M. Ouldali, N. Morellet, J. Lepault, S. Bouaziz
Date :  23 Nov 11  (Deposition) - 24 Oct 12  (Release) - 24 Oct 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (8x)
NMR Structure *:  A  (1x)
Keywords :  Alpha Helix, Amphipathic, Perforating Peptide, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Elaid, S. Libersou, M. Ouldali, R. Rhayyat, C. Henry, N. Morellet, J. Lepault, S. Bouaziz
Nmr Structure Of The C-Terminal Domain Of Vp7 In Membrane Mimicking Micelles
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OUTER CAPSID GLYCOPROTEIN VP7
    Chains: A
    Engineered: YES
    Fragment: UNP RESIDUES 266-326
    Organism Scientific: ROTAVIRUS A
    Organism Taxid: 578843
    Strain: ISOLATE HUMAN/BELGIUM/4106/2000 G3-P11[14]

 Structural Features

(-) Chains, Units

  1
NMR Structure (8x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LM7)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:61
 aligned with VP7_ROT41 | Q3ZK60 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:61
                                   275       285       295       305       315       325 
            VP7_ROT41   266 SDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQLMSKRSRSLNSAAFYYRV 326
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------- Transcript
                 2lm7 A 266 SDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQLMSKRSRSLNSAAFYYRV 326
                                   275       285       295       305       315       325
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LM7)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (VP7_ROT41 | Q3ZK60)
biological process
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0039621    T=13 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.
    GO:0044165    host cell endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0044166    host cell endoplasmic reticulum lumen    The volume enclosed by the membranes of the host cell endoplasmic reticulum.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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(-) Related Entries Specified in the PDB File

2kvl NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7
3fmg STRUCTURE OF ROTAVIRUS OUTER-LAYER PROTEIN VP7 BOUND WITH A NEUTRALIZING FAB