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(-) Description

Title :  STRUCTURE OF ANA-RNA HYBRID DUPLEX
 
Authors :  C. Gonzalez, N. Martn-Pintado, J. Watts, I. Gomez-Pinto, M. Dhama, M. O J. Schwartzentruber, G. Portella
Date :  06 Oct 09  (Deposition) - 09 Feb 10  (Release) - 28 Apr 10  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
Keywords :  Ana, Arabinonucleic Acid, Nucleic Acid Structure, Nmr/Md/Ti, Hybrid Duplex, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. K. Watts, N. Martin-Pintado, I. Gomez-Pinto, J. Schwartzentruber, G. Portella, M. Orozco, C. Gonzalez, M. J. Damha
Differential Stability Of 2'F-Ana*Rna And Ana*Rna Hybrid Duplexes: Roles Of Structure, Pseudohydrogen Bonding, Hydration, Ion Uptake And Flexibility.
Nucleic Acids Res. V. 38 2498 2010
PubMed-ID: 20071751  |  Reference-DOI: 10.1093/NAR/GKP1225

(-) Compounds

Molecule 1 - RNA (5'-R(*(GAO)P*(CAR)P*(UAR)P*(A5O)P*(UAR)P*(A5O)P*(A5O) P*(UAR)P*(GAO)P*(GAO))-3')
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - RNA (5'-R(*CP*CP*AP*UP*UP*AP*UP*AP*GP*C)-3')
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (10x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

NMR Structure (4, 10)
No.NameCountTypeFull Name
1A5O3Mod. NucleotideADENINE ARABINOSE-5'-PHOSPHATE
2CAR1Mod. NucleotideCYTOSINE ARABINOSE-5'-PHOSPHATE
3GAO3Mod. NucleotideGUANINE ARABINOSE-5'-PHOSPHATE
4UAR3Mod. NucleotideURACIL ARABINOSE-5'-PHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 2KP3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KP3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KP3)

(-) Exons   (0, 0)

(no "Exon" information available for 2KP3)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:10
                                         
                  2kp3 A  1 gxuauaaugg 10
                            ||||||||10
                            ||||||||9-GAO
                            1-GAO|||10-GAO
                             2-CAR||  
                              3-UAR|  
                               4-A5O  
                                5-UAR 
                                 6-A5O
                                  7-A5O
                                   8-UAR

Chain B from PDB  Type:RNA  Length:10
                                         
                  2kp3 B 11 CCAUUAUAGC 20
                                    20

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KP3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KP3)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2KP3)

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