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(-) Description

Title :  SOLUTION NMR STRUCTURE OF ZN FINGER PROTEIN YBIL FROM ESCHERICHIA COLI. NESG TARGET ET107, OCSP TARGET EC0402
 
Authors :  A. Gutmanas, A. Yee, A. Lemak, C. Fares, V. Guido, C. H. Arrowsmith, Nort Structural Genomics Consortium (Nesg), Ontario Centre For St Proteomics (Ocsp)
Date :  13 Mar 09  (Deposition) - 31 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Zn Finger, Partially Disordered, Structural Proteomics, Metal- Binding, Zinc-Finger, Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Ontario Centre For Structural Proteomics, Ocsp (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Gutmanas, A. Yee, A. Lemak, C. Fares, C. H. Arrowsmith
Zn-Finger Protein Ybil From E. Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN YBII
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidP11
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System VariantRIL
    Expression System Vector TypePLASMID
    GeneB0803, JW0788, YBII, YBIL
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    StrainK-12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:59 , CYS A:62 , CYS A:80 , CYS A:83BINDING SITE FOR RESIDUE ZN A 109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KGO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KGO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KGO)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DKSA_2PS51128 Prokaryotic dksA C4-type zinc finger profiles.YBII_ECOLI5-76  1A:25-96
2ZF_DKSA_1PS01102 Prokaryotic dksA C4-type zinc finger.YBII_ECOLI39-63  1A:59-83
NMR Structure * (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DKSA_2PS51128 Prokaryotic dksA C4-type zinc finger profiles.YBII_ECOLI5-76  1A:25-96
2ZF_DKSA_1PS01102 Prokaryotic dksA C4-type zinc finger.YBII_ECOLI39-63  1A:59-83

(-) Exons   (0, 0)

(no "Exon" information available for 2KGO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with YBII_ECOLI | P41039 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
           YBII_ECOLI     1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR  88
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------zf-dskA_traR-2kgoA01 A:51-89           ------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhh...................hhhhhhhh.....hhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_DKSA_2  PDB: A:25-96 UniProt: 5-76                                   ------------ PROSITE (1)
                PROSITE (2) --------------------------------------ZF_DKSA_1  PDB: A:59-83  ------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 2kgo A  21 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 108
                                    30        40        50        60        70        80        90       100        

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KGO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KGO)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YBII_ECOLI | P41039)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.

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