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(-) Description

Title :  SOLUTION NMR STRUCTURE OF ZN FINGER PROTEIN YBIL FROM ESCHERICHIA COLI. NESG TARGET ET107, OCSP TARGET EC0402
 
Authors :  A. Gutmanas, A. Yee, A. Lemak, C. Fares, V. Guido, C. H. Arrowsmith, Nort Structural Genomics Consortium (Nesg), Ontario Centre For St Proteomics (Ocsp)
Date :  13 Mar 09  (Deposition) - 31 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Zn Finger, Partially Disordered, Structural Proteomics, Metal- Binding, Zinc-Finger, Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Ontario Centre For Structural Proteomics, Ocsp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gutmanas, A. Yee, A. Lemak, C. Fares, C. H. Arrowsmith
Zn-Finger Protein Ybil From E. Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN YBII
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P11
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Variant: RIL
    Expression System Vector Type: PLASMID
    Gene: B0803, JW0788, YBII, YBIL
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K-12

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:59 , CYS A:62 , CYS A:80 , CYS A:83BINDING SITE FOR RESIDUE ZN A 109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KGO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KGO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KGO)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DKSA_2PS51128 Prokaryotic dksA C4-type zinc finger profiles.YBII_ECOLI5-76  1A:25-96
2ZF_DKSA_1PS01102 Prokaryotic dksA C4-type zinc finger.YBII_ECOLI39-63  1A:59-83
NMR Structure * (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_DKSA_2PS51128 Prokaryotic dksA C4-type zinc finger profiles.YBII_ECOLI5-76  1A:25-96
2ZF_DKSA_1PS01102 Prokaryotic dksA C4-type zinc finger.YBII_ECOLI39-63  1A:59-83

(-) Exons   (0, 0)

(no "Exon" information available for 2KGO)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with YBII_ECOLI | P41039 from UniProtKB/Swiss-Prot  Length:88

    Alignment length:88
                                    10        20        30        40        50        60        70        80        
           YBII_ECOLI     1 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR  88
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------zf-dskA_traR-2kgoA01 A:51-89           ------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhh...................hhhhhhhh.....hhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_DKSA_2  PDB: A:25-96 UniProt: 5-76                                   ------------ PROSITE (1)
                PROSITE (2) --------------------------------------ZF_DKSA_1  PDB: A:59-83  ------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                 2kgo A  21 MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGAPIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR 108
                                    30        40        50        60        70        80        90       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KGO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KGO)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Zn_Beta_Ribbon (109)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YBII_ECOLI | P41039)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.

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