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(-) Description

Title :  SOLUTION STRUCTURE OF DNA CONTAINING ALPHA-OH-PDG: THE MUTAGENIC ADDUCT PRODUCED BY ACROLEIN
 
Authors :  C. De Los Santos, T. Zaliznyak, F. Johnson, R. Bonala, S. Attaluri
Date :  05 Jan 09  (Deposition) - 21 Apr 09  (Release) - 12 May 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (26x)
Keywords :  Acrolein Lesions, Dna Damaged, Dna Structure, Exocyclic, Propano-Dg Lesions (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Zaliznyak, R. Bonala, S. Attaluri, F. Johnson, C. De Los Santos
Solution Structure Of Dna Containing Alpha-Oh-Pdg: The Mutagenic Adduct Produced By Acrolein.
Nucleic Acids Res. V. 37 2153 2009
PubMed-ID: 19223332  |  Reference-DOI: 10.1093/NAR/GKP076
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*GP*TP*AP*CP*(63H)P*CP*AP*TP*GP*C)-3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

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NMR Structure (26x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
163H1Mod. Nucleotide(6R)-3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-HYDROXY-5,6,7,8-TETRAHYDROPYRIMIDO[1,2-A]PURIN-10(3H)-ONE

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:11
                                          
                  2kda A  1 CGTACgCATGC 11
                                 |  10 
                                 6-63H 

Chain B from PDB  Type:DNA  Length:11
                                          
                  2kda B  1 GCATGCGTACG 11
                                    10 

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2kd9