2KAM - JenaLib

Title :   NMR STRUCTURE OF DELTA-TOXIN FROM STAPHYLOCOCCUS AUREUS IN CD3OH

Authors :   N. Loureiro-Ferreira, J. Rodrigues, R. M. M. Brito

Date :   11 Nov 08 (Deposition) - 12 May 09 (Release) - 12 May 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Peptide, Cytolytic, Cytolysis, Formylation, Hemolysis, Membrane, Secreted, Toxin, Transmembrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Loureiro-Ferreira, J. Rodrigues, T. H. Birkbeck, R. M. M. Brito
Nmr Solution Structure Of Delta-Toxin In Membrane-Mimetic Environments
To Be Published
PubMed: search
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 4)

NMR Structure (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_HLD_STAAU_001 *	Q	3	A	HLD_STAAU	---	---	A	Q	3	A
2	UniProt	VAR_HLD_STAAU_002 *	W	15	L	HLD_STAAU	---	---	A	W	15	L
3	UniProt	VAR_HLD_STAAU_003 *	N	21	E	HLD_STAAU	---	---	A	N	21	E
4	UniProt	VAR_HLD_STAAU_004 *	T	24	I	HLD_STAAU	---	---	A	T	24	I
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:26
 aligned with HLD_STAAU | P0C1V1 from UniProtKB/Swiss-Prot  Length:26

    Alignment length:26
                                    10        20      
             HLD_STAAU    1 MAQDIISTIGDLVKWIIDTVNKFTKK 26
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains Delta_lysin-2kamA01      - Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --A-----------L-----E--I-- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  2kam A  1 mAQDIISTIGDLVKWIIDTVNKFTKK 26
                            |       10        20      
                            |                         
                            1-FME

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (8, 8)

NMR Structure(hide GO term definitions)

Chain A (HLD_STAAU | P0C1V1)

biological process
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0019836	hemolysis by symbiont of host erythrocytes	The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in the host organism by a symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0044179	hemolysis in other organism	The cytolytic destruction of red blood cells, with the release of intracellular hemoglobin, in one organism by another.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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