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(-) Description

Title :  SOLUTION STRUCTURE OF UPF0350 PROTEIN VC_2471. NORTHEAST STRUCTURAL GENOMICS TARGET VCR36
 
Authors :  Y. Wu, D. Parish, K. K. Singarapu, D. Sukumaran, A. Eletski, R. Shastry, M. Maglaqui, R. Xiao, J. Liu, M. C. Baran, G. Swapna, T. B. Acton, B. Rost G. T. Montelione, T. Szyperski, Northeast Structural Genomics Co (Nesg)
Date :  20 Jun 07  (Deposition) - 24 Jul 07  (Release) - 30 Jan 13  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Upf0350 Protein Vc_2471, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Wu, D. Parish, K. K. Singarapu, D. Sukumaran, A. Eletski, R. Shastry C. Nwosu, M. Maglaqui, R. Xiao, J. Liu, M. C. Baran, G. Swapna, B. Rost, G. T. Montelione, T. Szyperski
Solution Structure Of Upf0350 Protein Vc_2471.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0350 PROTEIN VC_2471
    Atcc: 39315
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VC_2471
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:94
 aligned with SDHE_VIBCH | Q9KPA2 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:94
                                                                                                                86        
                                    10        20        30        40        50        60        70        80     |   -    
            SDHE_VIBCH    1 MYTAEQKARIKWACRRGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLSKVR--------  -
               SCOP domains d2jr5a_ A: automated matches                                                                   SCOP domains
               CATH domains 2jr5A00 A:1-94 Ygfy                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhh..hhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                  2jr5 A  1 MYTAEQKARIKWACRRGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGRCENLGLAAMVDKIVAHNLSKVRLEHHHHHH 94
                                    10        20        30        40        50        60        70        80        90
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (SDHE_VIBCH | Q9KPA2)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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