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(-) Description

Title :  SOLUTION STRUCTURE OF C-TERMINAL DOMAIN OF NIFU-LIKE PROTEIN FROM ORYZA SATIVA
 
Authors :  T. Saio, K. Ogura, H. Kumeta, M. Yokochi, S. Katoh, E. Katoh, F. Inagaki, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  06 Feb 07  (Deposition) - 18 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Iron-Sulfur Cluster Binding, Program For Rice Genome Reserch, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Saio, H. Kumeta, K. Ogura, M. Yokochi, M. Asayama, S. Katoh, E. Katoh, K. Teshima, F. Inagaki
The Cooperative Role Of Oscnfu-1A Domain I And Domain Ii In The Iron Sulphur Cluster Transfer Process As Revealed By Nmr
J. Biochem. (Tokyo) V. 142 113 2007
PubMed-ID: 17545250  |  Reference-DOI: 10.1093/JB/MVM120
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NIFU-LIKE PROTEIN 1, CHLOROPLAST
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPET23D
    Expression System Vector TypeVECTOR
    FragmentRESIDUES 73-153
    GeneNIFU1
    Organism CommonRICE
    Organism ScientificORYZA SATIVA
    Organism Taxid4530
    SynonymOSNIFU1

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JNV)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:83
 aligned with NIFU1_ORYSJ | Q84LK7 from UniProtKB/Swiss-Prot  Length:226

    Alignment length:83
                                    80        90       100       110       120       130       140       150   
          NIFU1_ORYSJ    71 VQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETG 153
               SCOP domains d2jnva_ A: automated matches                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------NifU-2jnvA01 A:80-147                                               ------ Pfam domains
         Sec.struct. author .......hhhhhhhh.hhhhhh.....eeeeee...eeeeee........hhhhhhhhhhhhhhhh......eee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 2jnv A  71 MGLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLMEKIPDVAAVEPVTDKETG 153
                                    80        90       100       110       120       130       140       150   

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: NifU (7)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (NIFU1_ORYSJ | Q84LK7)
molecular function
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
biological process
    GO:0016226    iron-sulfur cluster assembly    The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009570    chloroplast stroma    The space enclosed by the double membrane of a chloroplast but excluding the thylakoid space. It contains DNA, ribosomes and some temporary products of photosynthesis.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NIFU1_ORYSJ | Q84LK71th5

(-) Related Entries Specified in the PDB File

1th5 A STRUCTURAL HOMOLOG
1veh A STRUCTURAL HOMOLOG