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(-) Description

Title :  NMR STRUCTURE OF E.COLI YFGJ MODELLED WITH TWO ZN+2 BOUND. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER317.
 
Authors :  T. A. Ramelot, J. R. Cort, A. A. Yee, A. Semesi, J. A Lukin, C. H. Arrowsmith, M. A. Kennedy, Northeast Structural Genomics Consortium (Nesg)
Date :  12 Jan 07  (Deposition) - 13 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  C4, C3H, C7H, Zinc Fingers, Two Zinc, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. A. Ramelot, J. R. Cort, A. A. Yee, C. H. Arrowsmith, M. A. Kennedy
Nmr Structure Of E. Coli Yfgj Bound To Two Zn+2.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YFGJ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: VECTOR
    Fragment: SEQUENCE DATABASE RESIDUES 13-83
    Gene: YFGJ
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:5 , CYS A:8 , CYS A:21 , CYS A:24BINDING SITE FOR RESIDUE ZN A 150
2AC2SOFTWARECYS A:34 , ASP A:36 , CYS A:37 , CYS A:54 , HIS A:58BINDING SITE FOR RESIDUE ZN A 200

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:71
 aligned with YFGJ_ECOLI | P76575 from UniProtKB/Swiss-Prot  Length:71

    Alignment length:71
                                    10        20        30        40        50        60        70 
            YFGJ_ECOLI    1 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVEFVLA 71
               SCOP domains d2jnea1 A:1-71 Hypothetical protein YfgJ                                SCOP domains
               CATH domains 2jneA00 A:1-71 YfgJ-like                                                CATH domains
               Pfam domains -DUF1407-2jneA01 A:2-71                                                 Pfam domains
         Sec.struct. author ...........eeee..eeee.....eeeeeee........eeeee..eeeee......ee.....eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  2jne A  1 MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVEFVLA 71
                                    10        20        30        40        50        60        70
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: Zn_Beta_Ribbon (109)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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