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(-) Description

Title :  SOLUTION NMR STRUCTURE OF THE YGDR PROTEIN FROM ESCHERICHIA COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER382A.
 
Authors :  P. Rossi, C. X. Chen, M. Jiang, K. Cunningham, L. Ma, R. Xiao, J. C. Liu, M. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date :  15 Dec 06  (Deposition) - 01 May 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Solution Nmr Structure, Hypothetical Lipoprotein, Psi-2 Target, Structural Genomics, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Rossi, C. X. Chen, M. Jiang, K. Cunningham, L. Ma, R. Xiao, J. Liu, M. C. Baran, G. V. T. Swapna, T. B. Acton, B. Rost, G. T. Montelione
Solution Nmr Structure Of The Ygdr Protein From Escherichia Coli. Northeast Structural Genomics Target Er382A.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL LIPOPROTEIN YGDR
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)+ MAGIC
    Expression System Taxid562
    Expression System VectorER382A-21.2
    Expression System Vector TypeVECTOR
    FragmentHYPOTHETICAL LIPOPROTEIN YGDR, RESIDUES 2-53
    GeneYGDR
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:50
 aligned with YGDR_ECOLI | P65294 from UniProtKB/Swiss-Prot  Length:72

    Alignment length:50
                                    32        42        52        62        72
            YGDR_ECOLI   23 DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER 72
               SCOP domains d2jn0a1 A:4-53 Hypothetical lipoprotein YgdR       SCOP domains
               CATH domains 2jn0A00 A:4-53                                     CATH domains
               Pfam domains DUF903-2jn0A01 A:4-53                              Pfam domains
         Sec.struct. author ..eeee....eee.....ee.....eeeee.....eeeee...eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                  2jn0 A  4 DYVMATKDGRMILTDGKPEIDDDTGLVSYHDQQGNAMQINRDDVSQIIER 53
                                    13        23        33        43        53

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (YGDR_ECOLI | P65294)
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        YGDR_ECOLI | P652943fif

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