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(-) Description

Title :  TRANSCRIPTION ACTIVATOR STRUCTURE REVEALS REDOX CONTROL OF A REPLICATION INITIATION REACTION
 
Authors :  C. M. Sanders, D. Sizov, P. R. Seavers, M. Ortiz-Lombardia, A. A. Antso
Date :  23 Jan 07  (Deposition) - 15 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Nuclear Protein, Dna Replication, Phosphorylation, Transcription Regulation, Viral Transcription Factor, Bovine Papillomavirus, Replication Initiation, Early Protein, Transcription, Redox Control, E1, E2, Oxidation, Activator, Repressor, Dna-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. M. Sanders, D. Sizov, P. R. Seavers, M. Ortiz-Lombardia, A. A. Antso
Transcription Activator Structure Reveals Redox Control Of A Replication Initiation Reaction.
Nucleic Acids Res. V. 35 3504 2007
PubMed-ID: 17478495  |  Reference-DOI: 10.1093/NAR/GKM166

(-) Compounds

Molecule 1 - REGULATORY PROTEIN E2
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPET11C
    FragmentN-TERMINAL TRANS-ACTIVATION DOMAIN (TAD), RESIDUES 1-209
    Organism ScientificBOVINE PAPILLOMAVIRUS TYPE 1
    Organism Taxid10559

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JEU)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JEU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:105 -Pro A:106

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JEU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JEU)

(-) Exons   (0, 0)

(no "Exon" information available for 2JEU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:197
 aligned with VE2_BPV1 | P03122 from UniProtKB/Swiss-Prot  Length:410

    Alignment length:197
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       
             VE2_BPV1     3 TACERLHVAQETQMQLIEKSSDKLQDHILYWTAVRTENTLLYAARKKGVTVLGHCRVPHSVVCQERAKQAIEMQLSLQELSKTEFGDEPWSLLDTSWDRYMSEPKRCFKKGARVVEVEFDGNASNTNWYTVYSNLYMRTEDGWQLAKAGADGTGLYYCTMAGAGRIYYSRFGDEAARFSTTGHYSVRDQDRVYAGVS 199
               SCOP domains d2jeua_ A: automated matches                                                                                                                                                                          SCOP domains
               CATH domains 2jeuA01 A:3-98  [code=1.10.287.30, no name defined]                                             ----------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh....ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh.....eeeeeeeeeeee..eeeeeeeeeeeeeeeeee..eeeeeeeee...eeeee.......eeeeehhhhhhhhh...eeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jeu A   3 TACERLHVAQETQMQLIEKSSDKLQDHILYWTAVRTENTLLYAARKKGVTVLGHCRVPHSVVCQERAKQAIEMQLSLQELSKTEFGDEPWSLLDTSWDRYMSEPKRCFKKGARVVEVEFDGNASNTNWYTVYSNLYMRTEDGWQLAKAGADGTGLYYCTMAGAGRIYYSRFGDEAARFSTTGHYSVRDQDRVYAGVS 199
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JEU)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (VE2_BPV1 | P03122)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006275    regulation of DNA replication    Any process that modulates the frequency, rate or extent of DNA replication.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0039693    viral DNA genome replication    The replication of a viral DNA genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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  Cis Peptide Bonds
    Glu A:105 - Pro A:106   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VE2_BPV1 | P031221dbd 1jjh 2bop 2jex

(-) Related Entries Specified in the PDB File

1dbd E2 DEOXYRIBONUCLEIC ACID-BINDING DOMAIN FROM PAPILLOMAVIRUS BPV-1
1jjh E2 DNA-BINDING DOMAIN FROM BOVINE PAPILLOMAVIRUS TYPE 1
2bop BOVINE PAPILLOMAVIRUS-1 E2 (DEOXYRIBONUCLEIC ACID-BINDING DOMAIN) (RESIDUES 325 - 410) COMPLEXED WITH DEOXYRIBONUCLEIC ACID