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(-) Description

Title :  THE CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR RHA06195 FROM RHODOCOCCUS SP. RHA1
 
Authors :  M. T. Cymborowski, M. Chruszcz, T. Skarina, O. Onopriyenko, A. Savchen A. Edwards, A. Joachimiak, W. Minor, Midwest Center For Structura Genomics (Mcsg)
Date :  06 Sep 06  (Deposition) - 10 Oct 06  (Release) - 05 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  A,B,C,D  (1x)
Keywords :  Sad, Transcriptional Regulator, Psi-2, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. T. Cymborowski, M. Chruszcz, T. Skarina, O. Onopriyenko, A. Savchenko, A. Edwards, W. Minor
The Crystal Structure Of A Putative Transcriptional Regulator Rha06195 From Rhodococcus Sp. Rha1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TRANSCRIPTIONAL REGULATOR
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 GOLD (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: RHODOCOCCUS SP.
    Organism Taxid: 101510
    Strain: RHA1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 
Biological Unit 3 (1x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2IA2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IA2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IA2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IA2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IA2)

(-) Exons   (0, 0)

(no "Exon" information available for 2IA2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with Q0SH23_RHOJR | Q0SH23 from UniProtKB/TrEMBL  Length:265

    Alignment length:250
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
         Q0SH23_RHOJR    16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2A01 A:16-83 'winged helix' repressor DNA binding domain         2ia2A02 A:84-265  [code=3.30.450.40, no name defined]                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.......eehhhhhhhh..hhhhhhhhhhhhhhh..eee...eeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....ee.......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 A  16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
                                    25        35        45        55        65        75        85        95       105       115       125       135       145    |  155       165       175       185       195       205      |215       225       235       245       255       265
                                                                                                                                               133-MSE          150-MSE                                                       212-MSE                                                 


Chain A from PDB  Type:PROTEIN  Length:250
 aligned with Q2F1F8_9NOCA | Q2F1F8 from UniProtKB/TrEMBL  Length:265

    Alignment length:250
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265
         Q2F1F8_9NOCA    16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRNASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2A01 A:16-83 'winged helix' repressor DNA binding domain         2ia2A02 A:84-265  [code=3.30.450.40, no name defined]                                                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.......eehhhhhhhh..hhhhhhhhhhhhhhh..eee...eeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....ee.......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 A  16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
                                    25        35        45        55        65        75        85        95       105       115       125       135       145    |  155       165       175       185       195       205      |215       225       235       245       255       265
                                                                                                                                               133-MSE          150-MSE                                                       212-MSE                                                 


Chain B from PDB  Type:PROTEIN  Length:246
 aligned with Q0SH23_RHOJR | Q0SH23 from UniProtKB/TrEMBL  Length:265

    Alignment length:249
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256         
         Q0SH23_RHOJR    17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2B01 B:17-83 'winged heli   x' repressor DNA binding domain     2ia2B02 B:84-265  [code=3.30.450.40, no name defined]                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.......ee......---.hhhhhhhhhhhhhhh..eee...eeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....eee......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 B  17 VQSLARGLAVIRCFDHRNQRRTLSDVAR---LTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
                                    26        36       | - |      56        66        76        86        96       106       116       126      |136       146   |   156       166       176       186       196       206     | 216       226       236       246       256         
                                                      44  48                                                                                  133-MSE          150-MSE                                                       212-MSE                                                 


Chain B from PDB  Type:PROTEIN  Length:246
 aligned with Q2F1F8_9NOCA | Q2F1F8 from UniProtKB/TrEMBL  Length:265

    Alignment length:249
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256         
         Q2F1F8_9NOCA    17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRNASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2B01 B:17-83 'winged heli   x' repressor DNA binding domain     2ia2B02 B:84-265  [code=3.30.450.40, no name defined]                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.......ee......---.hhhhhhhhhhhhhhh..eee...eeee.hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....eee......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 B  17 VQSLARGLAVIRCFDHRNQRRTLSDVAR---LTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVNR 265
                                    26        36       | - |      56        66        76        86        96       106       116       126      |136       146   |   156       166       176       186       196       206     | 216       226       236       246       256         
                                                      44  48                                                                                  133-MSE          150-MSE                                                       212-MSE                                                 


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with Q0SH23_RHOJR | Q0SH23 from UniProtKB/TrEMBL  Length:265

    Alignment length:247
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       
         Q0SH23_RHOJR    17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATV 263
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2C01 C:17-76 'winged helix' repressor DNA binding domain 2ia2C02 C:77-263  [code=3.30.450.40, no name defined]                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.......eehhhhhhhh..hhhhhhhhhhhhhhhh.eee...eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee......ee......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 C  17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATV 263
                                    26        36        46        56        66        76        86        96       106       116       126      |136       146   |   156       166       176       186       196       206     | 216       226       236       246       256       
                                                                                                                                              133-MSE          150-MSE                                                       212-MSE                                               


Chain C from PDB  Type:PROTEIN  Length:247
 aligned with Q2F1F8_9NOCA | Q2F1F8 from UniProtKB/TrEMBL  Length:265

    Alignment length:247
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       
         Q2F1F8_9NOCA    17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRNASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATV 263
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2C01 C:17-76 'winged helix' repressor DNA binding domain 2ia2C02 C:77-263  [code=3.30.450.40, no name defined]                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.......eehhhhhhhh..hhhhhhhhhhhhhhhh.eee...eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee......ee......eee...hhhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 C  17 VQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATV 263
                                    26        36        46        56        66        76        86        96       106       116       126      |136       146   |   156       166       176       186       196       206     | 216       226       236       246       256       
                                                                                                                                              133-MSE          150-MSE                                                       212-MSE                                               


Chain D from PDB  Type:PROTEIN  Length:245
 aligned with Q0SH23_RHOJR | Q0SH23 from UniProtKB/TrEMBL  Length:265

    Alignment length:249
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         Q0SH23_RHOJR    16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVN 264
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2D01 D:16-76 'winged helix' repressor DNA binding     doma2ia2D02 D:77-264  [code=3.30.450.40, no name defined]                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh......eehhhhhhhhhh.hhhhhhhhhhhhhhh..ee----.eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....eee......eee...hhhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 D  16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA----AFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVN 264
                                    25        35        45        55        65 |    | 75        85        95       105       115       125       135       145    |  155       165       175       185       195       205      |215       225       235       245       255         
                                                                              67   72                                                          133-MSE          150-MSE                                                       212-MSE                                                


Chain D from PDB  Type:PROTEIN  Length:245
 aligned with Q2F1F8_9NOCA | Q2F1F8 from UniProtKB/TrEMBL  Length:265

    Alignment length:249
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255         
         Q2F1F8_9NOCA    16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRIMTVGITIGTRLPAYATSMGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSMAAPIRNASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVN 264
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ia2D01 D:16-76 'winged helix' repressor DNA binding     doma2ia2D02 D:77-264  [code=3.30.450.40, no name defined]                                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh......eehhhhhhhhhh.hhhhhhhhhhhhhhh..ee----.eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeee.....eee......eee...hhhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhh.eeee......eeeeeeeee.....eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ia2 D  16 YVQSLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA----AFWLTPRVLELGYSYLSSLSLPEVAQPHLEKLSHKVHESSSVSILDGADIVYVARVPVSRImTVGITIGTRLPAYATSmGRVLLAGLPDDELDAYLEKLDIQRLTERTITARDELKAAILAVRADGICVLDQELEAGLRSmAAPIRGASGLTVAAVNISTPAARYSLEDLHSDLIPSLRVTATDIEQDLATVN 264
                                    25        35        45        55        65 |    | 75        85        95       105       115       125       135       145    |  155       165       175       185       195       205      |215       225       235       245       255         
                                                                              67   72                                                          133-MSE          150-MSE                                                       212-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2IA2)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IA2)

(-) Gene Ontology  (5, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q0SH23_RHOJR | Q0SH23)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0046278    3,4-dihydroxybenzoate metabolic process    The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

Chain A,B,C,D   (Q2F1F8_9NOCA | Q2F1F8)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0046278    3,4-dihydroxybenzoate metabolic process    The chemical reactions and pathways involving protocatechuate, the anion of protocatechuic acid (3,4-dihydroxybenzoic acid).
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
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  2ia2
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  Q0SH23_RHOJR | Q0SH23
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  Q2F1F8_9NOCA | Q2F1F8
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 Related Entries

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