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(-) Description

Title :  HUMAN INTERLEUKIN4 INDUCED PROTEIN1 MOLECULE
 
Authors :  P. Bhattacharya
Date :  02 Sep 06  (Deposition) - 26 Sep 06  (Release) - 26 Sep 06  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  _
Keywords :  Interleukin 4 Induced Protein 1 [Homo Sapiens] (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Bhattacharya, School Of Life Sciences, Jawaharlal Nehru University, New Delhi-110067, India, Tel:91-011-2670-4523, Fax:91-011-2618-7338
Human Interleukin Protein1 Molecule Domain
Not Decided Yet V. 0 0 2006
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - INTERLEUKIN 4 INDUCED PROTEIN 1 [HOMO SAPIENS]
    Chains: _
    EC Number: 0
    Fragment: INTERLEUKIN 4 INDUCED PROTEIN 1 [HOMO SAPIENS]
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Other Details: LOCUS CAI54292 575 AA LINEAR PRI 13-OCT-2005 DEFINITION INTERLEUKIN 4 INDUCED PROTEIN 1 [HOMO SAPIENS]. ACCESSION CAI54292 VERSION CAI54292.1 GI:71060511 DBSOURCE EMBL ACCESSION AJ880387.
    Strain: HOMO SAPIENS

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2I8H)

(-) Sites  (0, 0)

(no "Site" information available for 2I8H)

(-) SS Bonds  (1, 1)

Theoretical Model
No.Residues
1 :44 - :207

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Ser  :341 -Pro  :342

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Theoretical Model (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_048260A501SOXLA_HUMANPolymorphism2290772_A509S
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I8H)

(-) Exons   (6, 6)

Theoretical Model (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.5ENST000003918265ENSE00001509829chr19:50400147-5040009256OXLA_HUMAN-00--
1.6ENST000003918266ENSE00001239914chr19:50399439-5039940535OXLA_HUMAN1-550--
1.7ENST000003918267ENSE00001191240chr19:50399310-50399072239OXLA_HUMAN5-84801_:38-9255
1.8ENST000003918268ENSE00000721200chr19:50398437-50398325113OXLA_HUMAN85-122381_:93-13038
1.9ENST000003918269ENSE00000869203chr19:50397726-50397525202OXLA_HUMAN122-189681_:130-19768
1.10ENST0000039182610ENSE00000954674chr19:50394730-5039466269OXLA_HUMAN190-212231_:198-22023
1.11ENST0000039182611ENSE00001191215chr19:50394364-50394228137OXLA_HUMAN213-258461_:221-26646
1.12bENST0000039182612bENSE00001360040chr19:50393857-50392916942OXLA_HUMAN258-5673101_:266-512247

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain _ from PDB  Type:PROTEIN  Length:475
 aligned with OXLA_HUMAN | Q96RQ9 from UniProtKB/Swiss-Prot  Length:567

    Alignment length:475
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499     
           OXLA_HUMAN    30 QDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKI 504
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eee........eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee....eeeeeee..eeeeeeee.....eeeeeee.eeee..hhhhhhh.eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee........eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh.......eeeeeeee.hhh......ee....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.7  PDB: - UniProt: 5-84                         Exon 1.8  PDB: - UniProt: 85-122      -------------------------------------------------------------------Exon 1.10  PDB: -      Exon 1.11  PDB: - UniProt: 213-258            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------Exon 1.9  PDB: - UniProt: 122-189                                   --------------------------------------------------------------------Exon 1.12b  PDB: - UniProt: 258-567                                                                                                                                                                                                                     Transcript 1 (2)
                 2i8h _  38 QDPFEKCMQDPDYEQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVAAKVLSDAGHKVTILEADNRIGGRIFTYRDQNTGWIGELGAMRMPSSHRILHKLCQGLGLNLTKFTQYDKNTWTEVHEVKLRNYVVEKVPEKLGYALRPQEKGHSPEDIYQMALNQALKDLKALGCRKAMKKFERHTLLEYLLGEGNLSRPAVQLLGDVMSEDGFFYLSFAEALRAHSCLSDRLQYSRIVGGWDLLPRALLSSLSGLVLLNAPVVAMTQGPHDVHVQIETSPPARNLKVLKADVVLLTASGPAVKRITFSPPLPRHMQEALRRLHYVPATKVFLSFRRPFWREEHIEGGHSNTDRPSRMIFYPPPREGALLLASYTWSDAAAAFAGLSREEALRLALDDVAALHGPVVRQLWDGTGVVKRWAEDQHSQGGFVVQPPALWQTEKDDWTVPYGRIYFAGEHTAYPHGWVETAVKSALRAAIKI 512
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2I8H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2I8H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I8H)

(-) Gene Ontology  (6, 6)

Theoretical Model(hide GO term definitions)
Chain   (OXLA_HUMAN | Q96RQ9)
molecular function
    GO:0001716    L-amino-acid oxidase activity    Catalysis of the reaction: a L-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006559    L-phenylalanine catabolic process    The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.

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  Cis Peptide Bonds
    Ser  :341 - Pro  :342   [ RasMol ]  
 

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