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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF THE METAL-CONTAINING PROTEIN AF0104 FROM ARCHAEOGLOBUS FULGIDUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET GR103.
 
Authors :  A. P. Kuzin, M. Abashidze, Y. Fang, C. Chen, K. Cunningham, K. Conover, L. C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (Nesg)
Date :  31 May 06  (Deposition) - 25 Jul 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  X-Ray Structure Nesg Gr103, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, M. Abashidze, Y. Fang, C. Chen, K. Cunningham, K. Conover, L. C. Ma, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt
Three Dimensional Structure Of The Hypothetical Protein Af0104 At The 2. 0 A Resolution.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+ MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 2234

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1ACY3Ligand/IonACETIC ACID
2MSE9Mod. Amino AcidSELENOMETHIONINE
3ZN3Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:61 , HIS A:89 , HIS A:91 , HIS A:104 , ACY A:301BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREHIS B:89 , HIS B:91 , HIS B:104 , ACY B:302BINDING SITE FOR RESIDUE ZN B 402
3AC3SOFTWARETYR C:61 , HIS C:89 , HIS C:91 , HIS C:104 , ACY C:303BINDING SITE FOR RESIDUE ZN C 403
4AC4SOFTWARETYR A:54 , TYR A:61 , HIS A:89 , HIS A:91 , HIS A:104 , ZN A:401 , GLY C:44 , GLU C:71BINDING SITE FOR RESIDUE ACY A 301
5AC5SOFTWAREGLY A:44 , GLU A:71 , TYR B:54 , TYR B:61 , HIS B:89 , HIS B:91 , HIS B:104 , ZN B:402BINDING SITE FOR RESIDUE ACY B 302
6AC6SOFTWAREGLU B:71 , TYR C:54 , TYR C:61 , HIS C:89 , HIS C:91 , HIS C:104 , ZN C:403BINDING SITE FOR RESIDUE ACY C 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2H6L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2H6L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2H6L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2H6L)

(-) Exons   (0, 0)

(no "Exon" information available for 2H6L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:140
 aligned with O30132_ARCFU | O30132 from UniProtKB/TrEMBL  Length:138

    Alignment length:140
                                                                                                                                                                   138  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       | -
         O30132_ARCFU     1 MKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLW--   -
               SCOP domains d2h6la1 A:1-138 Hypothetical protein AF0104                                                                                               -- SCOP domains
               CATH domains -2h6lA00 A:2-140 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeee.....hhhhhhhhhhhhhh...eeeeeeeeeeeeeeeeee....eeeeeee...eeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeee.......eee......eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h6l A   1 mKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELmEPLEILSLSGNVSmKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLWLE 140
                            |       10        20        30        40        50        60      | 70        80|       90       100       110       120       130       140
                            |                                                                67-MSE        81-MSE                                                       
                            1-MSE                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:140
 aligned with O30132_ARCFU | O30132 from UniProtKB/TrEMBL  Length:138

    Alignment length:140
                                                                                                                                                                   138  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       | -
         O30132_ARCFU     1 MKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLW--   -
               SCOP domains d2h6lb_ B: automated matches                                                                                                                 SCOP domains
               CATH domains -2h6lB00 B:2-140 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeee.....hhhhhhhhhhhhhh...eeeeeeeeeeeeeeeeee....eeeeeee...eeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeee.......eee......eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h6l B   1 mKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELmEPLEILSLSGNVSmKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLWLE 140
                            |       10        20        30        40        50        60      | 70        80|       90       100       110       120       130       140
                            1-MSE                                                            67-MSE        81-MSE                                                       


Chain C from PDB  Type:PROTEIN  Length:140
 aligned with O30132_ARCFU | O30132 from UniProtKB/TrEMBL  Length:138

    Alignment length:140
                                                                                                                                                                   138  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       | -
         O30132_ARCFU     1 MKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLW--   -
               SCOP domains d2h6lc_ C: automated matches                                                                                                                 SCOP domains
               CATH domains -2h6lC00 C:2-140 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeeeee.....hhhhhhhhhhhhhh...eeeeeeeeeeeeeeeeee....eeeeeee...eeeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeee.......eee......eee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2h6l C   1 mKVFEFEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELmEPLEILSLSGNVSmKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFDEQTGLFLWLE 140
                            |       10        20        30        40        50        60      | 70        80|       90       100       110       120       130       140
                            1-MSE                                                            67-MSE        81-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2H6L)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (O30132_ARCFU | O30132)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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