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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A ROK FAMILY PROTEIN FROM STREPTOCOCCUS PNEUMONIAE TIGR4 IN COMPLEX WITH SUCROSE
 
Authors :  K. Tan, H. Li, J. Abdullah, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date :  01 May 06  (Deposition) - 30 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Sugar Kinase, Rok Family, Streptococcus Pneumoniae Tigr4, Apc80695, Sucrose, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, H. Li, J. Abdullah, A. Joachimiak
The Crystal Structure Of A Rok Family Protein From Streptococcus Pneumoniae Tigr4 In Complex With Sucrose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ROK FAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 170187
    Strain: TIGR4

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2SUC3Ligand/IonSUCROSE
3TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
Biological Unit 1 (3, 20)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2SUC6Ligand/IonSUCROSE
3TRS2Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:7 , LYS A:14 , VAL A:104 , GLY A:232 , HIS A:270 , ALA A:271 , ASN A:274 , SUC A:291 , HOH A:298 , HOH A:306 , HOH A:307 , HOH A:345BINDING SITE FOR RESIDUE SUC A 290
2AC2SOFTWARELEU A:40 , GLU A:86 , ALA A:87 , SER A:233 , HIS A:270 , ALA A:271 , SUC A:290 , HOH A:339 , HOH A:375BINDING SITE FOR RESIDUE SUC A 291
3AC3SOFTWARETYR A:85 , SER A:89 , GLN A:92 , LEU A:93 , PRO A:94 , VAL A:95 , HOH A:366BINDING SITE FOR RESIDUE SUC A 292
4AC4SOFTWAREGLY A:61 , ASN A:99 , ASP A:100 , HOH A:338BINDING SITE FOR RESIDUE TRS A 293

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GUP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GUP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GUP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GUP)

(-) Exons   (0, 0)

(no "Exon" information available for 2GUP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
 aligned with A0A0H2USG4_S | A0A0H2USG4 from UniProtKB/TrEMBL  Length:289

    Alignment length:289
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280         
         A0A0H2USG4_S     1 MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAMIINGRLHRGRHGLGGEFGYMTTLAPAEKLNNWSQLASTGNMVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW 289
               SCOP domains d2gupa1 A:1-114 Hypothetical protein SP2142                                                                       d2gupa2 A:115-289 Hypothetical protein SP2142                                                                                                                                   SCOP domains
               CATH domains -2gupA01 A:2-98  [code=3.30.420.40, no name defined]                                              2gupA02 A:99-289  [code=3.30.420.40, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..eeeeeee.....eeeeeee....hhhhhhhhhhhhhh.....eeeeee..ee......ee....hhhhh..hhhhhhhhhh..eeeeehhhhhhhhhhhhh.....eeeeee...eeeeeee..eee........hhhhh..........hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhhhhhh........eee.....hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gup A   1 mTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAmSVPGAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELENAACVVIGTGIGGAmIINGRLHRGRHGLGGEFGYmTTLAPAEKLNNWSQLASTGNmVRYVIEKSGHTDWDGRKIYQEAAAGNILCQEAIERmNRNLAQGLLNIQYLIDPGVISLGGSISQNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQEEKQW 289
                            |       10        20        30        40        50      | 60        70        80        90       100       110       120       130|      140       150|      160       170 |     180       190       200       210       220       230       240       250       260       270       280         
                            |                                                      57-MSE                                                                   131-MSE             151-MSE              172-MSE                             208-MSE                                                                             
                            1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GUP)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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