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(-) Description

Title :  POST-CLEAVAGE STATE OF THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME
 
Authors :  D. J. Klein, A. R. Ferre-D'Amare
Date :  14 Mar 06  (Deposition) - 26 Sep 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna; Ribozyme; Pseudoknot; Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. J. Klein, A. R. Ferre-D'Amare
Structural Basis Of Glms Ribozyme Activation By Glucosamine-6-Phosphate
Science V. 313 1752 2006
PubMed-ID: 16990543  |  Reference-DOI: 10.1126/SCIENCE.1129666
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLMS RIBOZYME PRODUCT OLIGONUCLEOTIDE
    ChainsA
    EngineeredYES
    Other DetailsTHIS SEQUENCE OCCURS NATURALLY IN THE THERMOANAEROBACTER TENGCONGENSIS GLMS RIBOZYME
    SyntheticYES
 
Molecule 2 - GLMS RIBOZYME RNA
    ChainsB
    EngineeredYES
    Other DetailsIN VITRO TRANSCRIPTION OF SEQUNCE FROM THERMOANAEROBACTER TENGCONGENSIS
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric/Biological Unit (3, 7)
No.NameCountTypeFull Name
1A231Mod. NucleotideADENOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
2MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MG4Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREG A:1 , C A:2 , A B:35 , C B:36 , G B:37 , HOH B:282 , HOH B:324 , HOH B:325BINDING SITE FOR RESIDUE MG B 401
2AC2SOFTWAREA B:110 , HOH B:250 , HOH B:291 , HOH B:293BINDING SITE FOR RESIDUE MG B 402
3AC3SOFTWAREU B:79 , C B:81 , C B:82BINDING SITE FOR RESIDUE MG B 403
4AC4SOFTWAREA B:56 , C B:57 , U B:59BINDING SITE FOR RESIDUE MG B 404
5AC5SOFTWAREG A:1 , C A:2 , G B:65 , G B:66BINDING SITE FOR RESIDUE MES A 501
6AC6SOFTWAREC A:2 , G B:40 , G B:65 , G B:66 , U B:67 , A B:110BINDING SITE FOR RESIDUE MES B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GCV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GCV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2GCV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:RNA  Length:20
                                                    
                 2gcv A   1 GCGCCUGGACUUAAAGCCAU  20
                                    10        20

Chain B from PDB  Type:RNA  Length:123
                                                                                                                                                           
                 2gcv B  23 GGCUUUAAGUUGACGAGGGCAGGGUUUAUCGAGACAUCGGCGGGUGCCCUGCGGUCUUCCUGCGACCGUUAGAGGACUGGUAAAACCACAGGCGACUGUGGCAUAGAGCAGUCCGGGCAGGAa 145
                                    32        42        52        62        72        82        92       102       112       122       132       142  |
                                                                                                                                                    145-A23

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GCV)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2GCV)

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(-) Related Entries Specified in the PDB File

2gcs 2h0s 2h0w 2h0x 2h0z