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(-) Description

Title :  CRYSTAL STRUCTURE OF TA0583, AN ARCHAEAL ACTIN HOMOLOG, SEMET DATA
 
Authors :  A. Roeben, C. Kofler, I. Nagy, S. Nickell, F. Ulrich Hartl, A. Bracher
Date :  23 Jan 06  (Deposition) - 18 Apr 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Actin Homolog, Archaea, Atpase, Mreb, Parm, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Roeben, C. Kofler, I. Nagy, S. Nickell, F. Ulrich Hartl, A. Bracher
Crystal Structure Of An Archaeal Actin Homolog
J. Mol. Biol. V. 358 145 2006
PubMed-ID: 16500678  |  Reference-DOI: 10.1016/J.JMB.2006.01.096

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TA0583
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET28
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: TA0583
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 273075
    Strain: DSM 1728

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2FSK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FSK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FSK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FSK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FSK)

(-) Exons   (0, 0)

(no "Exon" information available for 2FSK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with ACTH_THEAC | Q9HKL4 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
           ACTH_THEAC     1 MVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNLIGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAERSM 326
               SCOP domains d2fska2 A:1-164 Hypothetical protein Ta0583                                                                                                                         d2fska1 A:165-326 Hypothetical protein Ta0583                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeee.....eeeee..eeee.....ee...ee.........eeee.hhh..................hhhhhhhhhhhhh.-----.eeeeeeeeehhhhhhhhhhhhhhhhh.eeeeee.hhh.eeeeeeeeeeeee.hhhhhhhhhhh........eeeeeee....eeeeeee......hhhhheee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhheeee..eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fsk A   1 mVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLASKEAFPLIAAALWESGI-----PVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLImRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLmDmEPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFDLAQEALSHPVmFRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNLIGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAERSm 326
                            |       10        20        30        40        50        60        70        80        90  |    100       110       120       130       140       150       160       170       180       190 |     200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            |                                                                                          93    99                                              148-MSE                                   190-MSE                                          239-MSE                                                                                326-MSE
                            1-MSE                                                                                                                                                                                        192-MSE                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:324
 aligned with ACTH_THEAC | Q9HKL4 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:326
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320      
           ACTH_THEAC     1 MVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNLIGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAERSM 326
               SCOP domains d2fskb2 B:1-164 Hypothetical protein Ta0583                                                                                                                         d2fskb1 B:165-326 Hypothetical protein Ta0583                                                                                                                      SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeee.hhh.eeeee..eeee.....ee...ee.........eeee.hhh..................hhhhhhhhhhhh...--...eeeeeeeeehhhhhhhhhhhhhhhhh.eeeeee.hhh.eeeeeeeeeeeee.hhhhhhhhhhh........eeeeeee....eeeeeee......hhhhheee..hhhhhhhhhhhhhhhhhh...hhhhhhhh...eee....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fsk B   1 mVVVGLDVGYGDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIRVPQGDGRLASKEAFPLIAAALWESGIH--GSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLImRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLmDmEPVVELSFSLQIGVGDAISALSRKIAKETGFVVPFDLAQEALSHPVmFRQKQVGGPEVSGPILEDLANRIIENIRLNLRGEVDRVTSLIPVGGGSNLIGDRFEEIAPGTLVKIKPEDLQFANALGYRDAAERSm 326
                            |       10        20        30        40        50        60        70        80        90   |  |100       110       120       130       140       150       160       170       180       190 |     200       210       220       230       240       250       260       270       280       290       300       310       320     |
                            |                                                                                           94 97                                                148-MSE                                   190-MSE                                          239-MSE                                                                                326-MSE
                            1-MSE                                                                                                                                                                                        192-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FSK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FSK)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (ACTH_THEAC | Q9HKL4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTH_THEAC | Q9HKL4: 2fsj 2fsn

(-) Related Entries Specified in the PDB File

2fsj THE SAME PROTEIN, NATIVE DATA