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(-) Description

Title :  CRYSTAL STRUCTURE OF BACTERIOPHAGE 186
 
Authors :  M. Lewis
Date :  03 Jan 06  (Deposition) - 13 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Biol. Unit 3:  A,B  (2x)
Keywords :  Genetic Switch, Regulation, Repressor, Cooperativity, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Pinkett, K. E. Shearwin, S. Stayrook, I. B. Dodd, T. Burr, A. Hochschild, J. B. Egan, M. Lewis
The Structural Basis Of Cooperative Regulation At An Alternate Genetic Switch
Mol. Cell V. 21 605 2006
PubMed-ID: 16507359  |  Reference-DOI: 10.1016/J.MOLCEL.2006.01.019
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - REPRESSOR PROTEIN CI
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: CI
    Mutation: YES
    Organism Scientific: ENTEROBACTERIA PHAGE 186
    Organism Taxid: 29252

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB
Biological Unit 3 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FJR)

(-) Sites  (0, 0)

(no "Site" information available for 2FJR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FJR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FJR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FJR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FJR)

(-) Exons   (0, 0)

(no "Exon" information available for 2FJR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
 aligned with RPC1_BP186 | P08707 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:189
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183         
           RPC1_BP186     4 DSLGWSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEAFVNNRESSDAKRIEGFTLSEEILKSDKQLSVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIEGAISIRELTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYSEVN 192
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhh...............eeeeeeee..eeeeeeeee.hhhhh......eeeeee..eeeeee.......eeeeeee..eeeeeeeeee...eeeee.....eeee....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjr A   4 DSLGWSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEAFVNNRESSDAKRIEGFTLSEEILKSDKQLSVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIKGAISIRELTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYSEVN 192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183         


Chain B from PDB  Type:PROTEIN  Length:189
 aligned with RPC1_BP186 | P08707 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:189
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183         
           RPC1_BP186     4 DSLGWSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEAFVNNRESSDAKRIEGFTLSEEILKSDKQLSVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIEGAISIRELTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYSEVN 192
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh...hhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhh................eeeeeeee..eeeeeeeee.hhhhh......eeeeee..eeeeee.......eeeeeee..eeeeeeeeee...eeeee.....eeee....eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjr B   4 DSLGWSNVDVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEAFVNNRESSDAKRIEGFTLSEEILKSDKQLSVDAQFFTKPLTDGMAIRSEGKIYFVDKQASLSDGLWLVDIKGAISIRELTKLPGRKLHVAGGKVPFECGIDDIKTLGRVVGVYSEVN 192
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FJR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2FJR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FJR)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (RPC1_BP186 | P08707)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0045892    negative regulation of transcription, DNA-templated    Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0051259    protein oligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers; protein oligomers may be composed of different or identical monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  2fjr
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  RPC1_BP186 | P08707
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RPC1_BP186 | P08707: 2fkd

(-) Related Entries Specified in the PDB File

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