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(-) Description

Title :  CRYSTAL STRUCTURE OF ANTIGEN TPF1 FROM TREPONEMA PALLIDUM
 
Authors :  A. Thumiger, A. Polenghi, E. Papinutto, R. Battistutta, C. Montecucco, G. Zanotti
Date :  02 Jan 06  (Deposition) - 10 Jan 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K,L  (1x)
Biol. Unit 2:  M,N,O,P  (3x)
Biol. Unit 3:  A (3x),B (3x),C (3x),D (3x),E (3x),F (3x),G (3x),H (3x),I (3x),J (3x),K (3x),L (3x),M (3x),N (3x),O (3x),P (3x)
Keywords :  Mini Ferritin, Iron Binding Protein, Antigen, Metal Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Thumiger, A. Polenghi, E. Papinutto, R. Battistutta, C. Montecucco, G. Zanotti
Crystal Structure Of Antigen Tpf1 From Treponema Pallidum.
Proteins V. 62 827 2006
PubMed-ID: 16345079  |  Reference-DOI: 10.1002/PROT.20828
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTIGEN TPF1
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSM214G-TPF1
    Expression System Strain: XL 1BLUE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TPF1
    Organism Scientific: TREPONEMA PALLIDUM
    Organism Taxid: 160
    Synonym: ANTIGEN C1-5, ANTIGEN 4D

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCDEFGHIJKL    
Biological Unit 2 (3x):             MNOP
Biological Unit 3 (3x): A (3x)B (3x)C (3x)D (3x)E (3x)F (3x)G (3x)H (3x)I (3x)J (3x)K (3x)L (3x)M (3x)N (3x)O (3x)P (3x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1FE16Ligand/IonFE (III) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:84 , GLU A:88 , HIS D:57BINDING SITE FOR RESIDUE FE A 601
02AC2SOFTWAREASP B:84 , GLU B:88 , HIS C:57 , HIS C:69BINDING SITE FOR RESIDUE FE B 602
03AC3SOFTWAREHIS B:57 , ASP C:84 , GLU C:88BINDING SITE FOR RESIDUE FE C 603
04AC4SOFTWAREHIS A:57 , ASP D:84 , GLU D:88BINDING SITE FOR RESIDUE FE D 604
05AC5SOFTWAREASP E:84 , GLU E:88 , HIS H:57 , HIS H:69BINDING SITE FOR RESIDUE FE E 605
06AC6SOFTWAREASP F:84 , GLU F:88 , HIS G:57BINDING SITE FOR RESIDUE FE F 606
07AC7SOFTWAREHIS F:57 , ASP G:84 , GLU G:88BINDING SITE FOR RESIDUE FE G 607
08AC8SOFTWAREHIS E:57 , ASP H:84 , GLU H:88BINDING SITE FOR RESIDUE FE H 608
09AC9SOFTWAREASP I:84 , GLU I:88 , HIS L:57BINDING SITE FOR RESIDUE FE I 609
10BC1SOFTWAREASP J:84 , GLU J:88 , HIS K:57BINDING SITE FOR RESIDUE FE J 610
11BC2SOFTWAREHIS J:57 , ASP K:84 , GLU K:88BINDING SITE FOR RESIDUE FE K 611
12BC3SOFTWAREHIS I:57 , ASP L:84 , GLU L:88BINDING SITE FOR RESIDUE FE L 612
13BC4SOFTWAREASP M:84 , GLU M:88 , HIS N:57BINDING SITE FOR RESIDUE FE M 613
14BC5SOFTWAREHIS M:57 , HOH M:625 , ASP N:84 , GLU N:88BINDING SITE FOR RESIDUE FE N 614
15BC6SOFTWAREASP O:84 , GLU O:88 , HIS P:57BINDING SITE FOR RESIDUE FE O 615
16BC7SOFTWAREHIS O:57 , ASP P:84 , GLU P:88BINDING SITE FOR RESIDUE FE P 616

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FJC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FJC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FJC)

(-) PROSITE Motifs  (2, 32)

Asymmetric Unit (2, 32)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.TPF1_TREPA57-73
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  16A:57-73
B:57-73
C:57-73
D:57-73
E:57-73
F:57-73
G:57-73
H:57-73
I:57-73
J:57-73
K:57-73
L:57-73
M:57-73
N:57-73
O:57-73
P:57-73
2DPS_2PS00819 Dps protein family signature 2.TPF1_TREPA83-97
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  16A:83-97
B:83-97
C:83-97
D:83-97
E:83-97
F:83-97
G:83-97
H:83-97
I:83-97
J:83-97
K:83-97
L:83-97
M:83-97
N:83-97
O:83-97
P:83-97
Biological Unit 1 (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.TPF1_TREPA57-73
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  12A:57-73
B:57-73
C:57-73
D:57-73
E:57-73
F:57-73
G:57-73
H:57-73
I:57-73
J:57-73
K:57-73
L:57-73
-
-
-
-
2DPS_2PS00819 Dps protein family signature 2.TPF1_TREPA83-97
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  12A:83-97
B:83-97
C:83-97
D:83-97
E:83-97
F:83-97
G:83-97
H:83-97
I:83-97
J:83-97
K:83-97
L:83-97
-
-
-
-
Biological Unit 2 (2, 24)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.TPF1_TREPA57-73
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  12-
-
-
-
-
-
-
-
-
-
-
-
M:57-73
N:57-73
O:57-73
P:57-73
2DPS_2PS00819 Dps protein family signature 2.TPF1_TREPA83-97
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  12-
-
-
-
-
-
-
-
-
-
-
-
M:83-97
N:83-97
O:83-97
P:83-97
Biological Unit 3 (2, 96)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1DPS_1PS00818 Dps protein family signature 1.TPF1_TREPA57-73
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  48A:57-73
B:57-73
C:57-73
D:57-73
E:57-73
F:57-73
G:57-73
H:57-73
I:57-73
J:57-73
K:57-73
L:57-73
M:57-73
N:57-73
O:57-73
P:57-73
2DPS_2PS00819 Dps protein family signature 2.TPF1_TREPA83-97
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 		  48A:83-97
B:83-97
C:83-97
D:83-97
E:83-97
F:83-97
G:83-97
H:83-97
I:83-97
J:83-97
K:83-97
L:83-97
M:83-97
N:83-97
O:83-97
P:83-97

(-) Exons   (0, 0)

(no "Exon" information available for 2FJC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjca1 A:27-177 Dodecameric ferritin homolog                                                                                                           SCOP domains
               CATH domains 2fjcA00 A:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc A  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain B from PDB  Type:PROTEIN  Length:156
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:156
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      
           TPF1_TREPA    22 SAPGVPDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcb_ B: automated matches                                                                                                                                 SCOP domains
               CATH domains 2fjcB00 B:22-177  [code=1.20.1260.10, no name defined]                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc B  22 SAPGVPDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171      


Chain C from PDB  Type:PROTEIN  Length:150
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:150
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
           TPF1_TREPA    28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcc_ C: automated matches                                                                                                                           SCOP domains
               CATH domains 2fjcC00 C:28-177  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc C  28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177


Chain D from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcd_ D: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcD00 D:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc D  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain E from PDB  Type:PROTEIN  Length:150
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:150
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
           TPF1_TREPA    28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjce_ E: automated matches                                                                                                                           SCOP domains
               CATH domains 2fjcE00 E:28-177  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc E  28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177


Chain F from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcf_ F: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcF00 F:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc F  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain G from PDB  Type:PROTEIN  Length:150
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:150
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
           TPF1_TREPA    28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcg_ G: automated matches                                                                                                                           SCOP domains
               CATH domains 2fjcG00 G:28-177  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc G  28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177


Chain H from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjch_ H: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcH00 H:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc H  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain I from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjci_ I: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcI00 I:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc I  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain J from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcj_ J: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcJ00 J:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc J  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain K from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjck_ K: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcK00 K:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc K  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain L from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcl_ L: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcL00 L:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc L  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain M from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcm_ M: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcM00 M:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc M  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 


Chain N from PDB  Type:PROTEIN  Length:150
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:150
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
           TPF1_TREPA    28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcn_ N: automated matches                                                                                                                           SCOP domains
               CATH domains 2fjcN00 N:28-177  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc N  28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177


Chain O from PDB  Type:PROTEIN  Length:150
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:150
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177
           TPF1_TREPA    28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjco_ O: automated matches                                                                                                                           SCOP domains
               CATH domains 2fjcO00 O:28-177  [code=1.20.1260.10, no name defined]                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fjc O  28 DARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177


Chain P from PDB  Type:PROTEIN  Length:151
 aligned with TPF1_TREPA | P16665 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:151
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176 
           TPF1_TREPA    27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
               SCOP domains d2fjcp_ P: automated matches                                                                                                                            SCOP domains
               CATH domains 2fjcP00 P:27-177  [code=1.20.1260.10, no name defined]                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------DPS_1            ---------DPS_2          -------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2fjc P  27 PDARAIAAICEQLRQHVADLGVLYIKLHNYHWHIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTLGKAIWMLGATLKA 177
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Up-down Bundle (3216)
(-)
Topology: Ferritin; (180)
(-)
Homologous Superfamily: [code=1.20.1260.10, no name defined] (180)
(-)
Treponema pallidum. Organism_taxid: 160. (1)
1a2fjcB00B:22-177
1b2fjcA00A:27-177
1c2fjcP00P:27-177
1d2fjcC00C:28-177
1e2fjcE00E:28-177
1f2fjcG00G:28-177
1g2fjcN00N:28-177
1h2fjcO00O:28-177
1i2fjcD00D:27-177
1j2fjcF00F:27-177
1k2fjcH00H:27-177
1l2fjcI00I:27-177
1m2fjcJ00J:27-177
1n2fjcK00K:27-177
1o2fjcL00L:27-177
1p2fjcM00M:27-177

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FJC)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (TPF1_TREPA | P16665)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0016722    oxidoreductase activity, oxidizing metal ions    Catalysis of an oxidation-reduction in which the oxidation state of metal ion is altered.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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  2fjc
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  TPF1_TREPA | P16665
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2FJC)

(-) Related Entries Specified in the PDB File

1ji4 NAP PROTEIN FROM HELICOBACTER PYLORI
1ji5 DLP-1 FROM BACILLUS ANTHRACIS
1jig DLP-2 FROM BACILLUS ANTHRACIS