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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CONSERVED PROTEIN OF UNKNOWN FUNCTION ATU0297 FROM AGROBACTERIUM TUMEFACIENS
 
Authors :  Y. Kim, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  30 Dec 05  (Deposition) - 14 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Alpha-Beta, Dimeric Alpha-Beta Barrels, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Kim, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of The Conserved Hypothetical Protein Atu0297 From Agrobacterium Tumefaciens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPMCSG7
    Expression System StrainBL21DE3
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificAGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid176299
    StrainC58

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric/Biological Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2FIU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FIU)

(-) Exons   (0, 0)

(no "Exon" information available for 2FIU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:96
 aligned with A9CKF1_AGRFC | A9CKF1 from UniProtKB/TrEMBL  Length:95

    Alignment length:96
                                                                                                                         95 
                                    10        20        30        40        50        60        70        80        90    | 
          A9CKF1_AGRFC    1 MAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVEGI-  -
               SCOP domains d2fiua1 A:1-95 Hypothetical protein Atu0297                                                    - SCOP domains
               CATH domains -2fiuA00 A:2-96  [code=3.30.70.900, no name defined]                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhhhhhhh..eeeee...eeeee.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2fiu A  1 mAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEmmIVEGIG 96
                            |       10        20        30        40        50        60        70        80        90      
                            |                                                                                      89-MSE   
                            1-MSE                                                                                   90-MSE  

Chain B from PDB  Type:PROTEIN  Length:96
 aligned with A9CKF1_AGRFC | A9CKF1 from UniProtKB/TrEMBL  Length:95

    Alignment length:96
                                                                                                                         95 
                                    10        20        30        40        50        60        70        80        90    | 
          A9CKF1_AGRFC    1 MAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEMMIVEGI-  -
               SCOP domains d2fiub_ B: automated matches                                                                     SCOP domains
               CATH domains -2fiuB00 B:2-96  [code=3.30.70.900, no name defined]                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhhhhhhh..eeeee...eeeee.....eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                  2fiu B  1 mAKGYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPSVQHAIDCYNSPEYQAAAKIRQEVADAEmmIVEGIG 96
                            |       10        20        30        40        50        60        70        80        90      
                            1-MSE                                                                                  89-MSE   
                                                                                                                    90-MSE  

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FIU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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