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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CONSERVED HALOACID DEHALOGENASE-LIKE PROTEIN OF UNKNOWN FUNCTION ATU0790 FROM AGROBACTERIUM TUMEFACIENS STR. C58

Authors :   B. Nocek, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)

Date :   14 Dec 05 (Deposition) - 31 Jan 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Conserved Hypothetical, Sad, Structural Genomics, Agrobacterium Tumefaciens, Had-Superfamily Hydrolase, Putative B- Phosphoglucomutase, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. Nocek, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Hydrolases/Phosphatases-Like Fold Protein From Agrobacterium Tumefaciens Str. C58
To Be Published
PubMed: search

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS STR.
	Organism Taxid	:	176299
	Strain	:	C58

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 9)

No.	Name	Count	Type	Full Name
1	MG	1	Ligand/Ion	MAGNESIUM ION
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (1, 1)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:10 , ASP A:12 , ASP A:168 , HOH A:1105 , HOH A:1118	BINDING SITE FOR RESIDUE MG A 1001

(no "SS Bond" information available for 2FDR)

Asymmetric/Biological Unit

No.	Residues
1	Ala A:128	-	Pro A:129
2	Lys A:143	-	Pro A:144

(no "SAP(SNP)/Variant" information available for 2FDR)

(no "PROSITE Motif" information available for 2FDR)

(no "Exon" information available for 2FDR)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:222
 aligned with A9CJW3_AGRFC | A9CJW3 from UniProtKB/TrEMBL  Length:229

    Alignment length:222
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  
         A9CJW3_AGRFC     3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPLSASLLDKSEKLLDMRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAMAE 224
               SCOP domains d2fdra1 A:3-224 Hypothetical protein Atu0790                                                                                                                                                                                   SCOP domains
               CATH domains 2fdrA01         2fdrA02 A:19-85 Putative phosphatase; domain 2                     2fdrA01 A:3-18,A:86-224  [code=3.40.50.1000, no name defined]                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee........hhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhh...eeeee..hhhhhhhhhhhh.hhhhh...eeehhhhh.......hhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhh..eeeee........hhhhhhhhhh..eee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fdr A   3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEmGERFAGmTWKNILLQVESEASIPLSASLLDKSEKLLDmRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLDmmLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGmRVIGFTGASHTYPSHADRLTDAGAETVISRmQDLPAVIAAmAE 224
                                    12        22        32        42      | 52        62        72       |82        92       102       112   ||  122       132       142       152       162       172       182       192       202       212       222  
                                                                  42-MSE 49-MSE                         80-MSE                             116-MSE                                                          181-MSE                        212-MSE   222-MSE
                                                                                                                                            117-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: HAD-like (349)

Superfamily: HAD-like (349)

Family: beta-Phosphoglucomutase-like (27)

Protein domain: Hypothetical protein Atu0790 (1)

Agrobacterium tumefaciens [TaxId: 358] (1)

d2fdra1

A:3-224

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1000, no name defined] (211)

C58 (Agrobacterium tumefaciens str) (1)

2fdrA01

A:3-18,A:86-224

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: DNA polymerase; domain 1 (617)

Homologous Superfamily: Putative phosphatase; domain 2 (65)

C58 (Agrobacterium tumefaciens str) (1)

2fdrA02

A:19-85

(no "Pfam Domain" information available for 2FDR)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (A9CJW3_AGRFC | A9CJW3)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric/Biological Unit
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:128 - Pro A:129	[ RasMol ]
		Lys A:143 - Pro A:144	[ RasMol ]

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1fez	PHOSPHONOACETALDEHYDE HYDROLASE RELATED ID: APC5770 RELATED DB: TARGETDB
1o03	BETA-PHOSPHOGLUCOMUTASE
2ah5	UNKNOWN FUNCTIONS/STRUCTURAL GENOMICS TARGET

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (1, 1)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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SAPs(SNPs)/Variants (0, 0)

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