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(-) Description

Title :  CRYSTAL STRUCTURE OF CONSERVED HALOACID DEHALOGENASE-LIKE PROTEIN OF UNKNOWN FUNCTION ATU0790 FROM AGROBACTERIUM TUMEFACIENS STR. C58
 
Authors :  B. Nocek, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)
Date :  14 Dec 05  (Deposition) - 31 Jan 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Conserved Hypothetical, Sad, Structural Genomics, Agrobacterium Tumefaciens, Had-Superfamily Hydrolase, Putative B- Phosphoglucomutase, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. Nocek, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of Hydrolases/Phosphatases-Like Fold Protein From Agrobacterium Tumefaciens Str. C58
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificAGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid176299
    StrainC58

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:10 , ASP A:12 , ASP A:168 , HOH A:1105 , HOH A:1118BINDING SITE FOR RESIDUE MG A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FDR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:128 -Pro A:129
2Lys A:143 -Pro A:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FDR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2FDR)

(-) Exons   (0, 0)

(no "Exon" information available for 2FDR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:222
 aligned with A9CJW3_AGRFC | A9CJW3 from UniProtKB/TrEMBL  Length:229

    Alignment length:222
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  
         A9CJW3_AGRFC     3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPLSASLLDKSEKLLDMRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAMAE 224
               SCOP domains d2fdra1 A:3-224 Hypothetical protein Atu0790                                                                                                                                                                                   SCOP domains
               CATH domains 2fdrA01         2fdrA02 A:19-85 Putative phosphatase; domain 2                     2fdrA01 A:3-18,A:86-224  [code=3.40.50.1000, no name defined]                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee........hhhhhhhhhhhhhhhh....hhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh....hhhhhhhhh...eeeee..hhhhhhhhhhhh.hhhhh...eeehhhhh.......hhhhhhhhhhh..hhh.eeeee.hhhhhhhhhhh..eeeee........hhhhhhhhhh..eee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2fdr A   3 GFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEmGERFAGmTWKNILLQVESEASIPLSASLLDKSEKLLDmRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLDmmLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGmRVIGFTGASHTYPSHADRLTDAGAETVISRmQDLPAVIAAmAE 224
                                    12        22        32        42      | 52        62        72       |82        92       102       112   ||  122       132       142       152       162       172       182       192       202       212       222  
                                                                  42-MSE 49-MSE                         80-MSE                             116-MSE                                                          181-MSE                        212-MSE   222-MSE
                                                                                                                                            117-MSE                                                                                                       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FDR)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A9CJW3_AGRFC | A9CJW3)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1fez PHOSPHONOACETALDEHYDE HYDROLASE RELATED ID: APC5770 RELATED DB: TARGETDB
1o03 BETA-PHOSPHOGLUCOMUTASE
2ah5 UNKNOWN FUNCTIONS/STRUCTURAL GENOMICS TARGET