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(-) Description

Title :  CRYSTAL STRUCTURE OF ACBP FROM ARMADILLO HARDERIAN GLAND
 
Authors :  M. D. Costabel, D. M. A. Guerin
Date :  14 Dec 05  (Deposition) - 24 Oct 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Acbp, Diazepam Binding Inhibitor, , Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. D. Costabel, M. R. Ermacora, J. A. Santome, P. M. Alzari, D. M. Guerin
Structure Of Armadillo Acbp: A New Member Of The Acyl-Coa-Binding Protein Family.
Acta Crystallogr. , Sect. F V. 62 958 2006
PubMed-ID: 17012783  |  Reference-DOI: 10.1107/S1744309106038164
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACYL-COA-BINDING PROTEIN
    ChainsA, B, C
    Organism CommonLARGE HAIRY ARMADILLO
    Organism ScientificCHAETOPHRACTUS VILLOSUS
    Organism Taxid29080
    Other DetailsHARDERIAN GLAND
    SynonymACBP, EP

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit ABC
Biological Unit 1 (1x)A  
Biological Unit 2 (1x) B 
Biological Unit 3 (1x)  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2FDQ)

(-) Sites  (0, 0)

(no "Site" information available for 2FDQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2FDQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2FDQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2FDQ)

(-) PROSITE Motifs  (2, 6)

Asymmetric Unit (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACB_2PS51228 Acyl-CoA-binding (ACB) domain profile.ACBP_CHAVI2-87
 
 
  3A:1-86
B:1-86
C:1-86
2ACB_1PS00880 Acyl-CoA-binding (ACB) domain signature.ACBP_CHAVI20-38
 
 
  3A:19-37
B:19-37
C:19-37
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACB_2PS51228 Acyl-CoA-binding (ACB) domain profile.ACBP_CHAVI2-87
 
 
  1A:1-86
-
-
2ACB_1PS00880 Acyl-CoA-binding (ACB) domain signature.ACBP_CHAVI20-38
 
 
  1A:19-37
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACB_2PS51228 Acyl-CoA-binding (ACB) domain profile.ACBP_CHAVI2-87
 
 
  1-
B:1-86
-
2ACB_1PS00880 Acyl-CoA-binding (ACB) domain signature.ACBP_CHAVI20-38
 
 
  1-
B:19-37
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACB_2PS51228 Acyl-CoA-binding (ACB) domain profile.ACBP_CHAVI2-87
 
 
  1-
-
C:1-86
2ACB_1PS00880 Acyl-CoA-binding (ACB) domain signature.ACBP_CHAVI20-38
 
 
  1-
-
C:19-37

(-) Exons   (0, 0)

(no "Exon" information available for 2FDQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:86
 aligned with ACBP_CHAVI | P82934 from UniProtKB/Swiss-Prot  Length:87

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
            ACBP_CHAVI    2 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ACB_2  PDB: A:1-86 UniProt: 2-87                                                       PROSITE (1)
                PROSITE (2) ------------------ACB_1  PDB: A:19-37------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2fdq A  1 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 86
                                    10        20        30        40        50        60        70        80      

Chain B from PDB  Type:PROTEIN  Length:86
 aligned with ACBP_CHAVI | P82934 from UniProtKB/Swiss-Prot  Length:87

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
            ACBP_CHAVI    2 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2fdqB00 B:1-86  [code=1.20.80.10, no name defined]                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ACB_2  PDB: B:1-86 UniProt: 2-87                                                       PROSITE (1)
                PROSITE (2) ------------------ACB_1  PDB: B:19-37------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2fdq B  1 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 86
                                    10        20        30        40        50        60        70        80      

Chain C from PDB  Type:PROTEIN  Length:86
 aligned with ACBP_CHAVI | P82934 from UniProtKB/Swiss-Prot  Length:87

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
            ACBP_CHAVI    2 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ACB_2  PDB: C:1-86 UniProt: 2-87                                                       PROSITE (1)
                PROSITE (2) ------------------ACB_1  PDB: C:19-37------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------- Transcript
                  2fdq C  1 SQAEFDKAAEEVKNLKTKPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWDAWNQLKGTSKEDAMKSYIDKVEELKKKYGI 86
                                    10        20        30        40        50        60        70        80      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2FDQ)

(-) CATH Domains  (1, 1)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2FDQ)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (ACBP_CHAVI | P82934)
molecular function
    GO:0000062    fatty-acyl-CoA binding    Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

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