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(-)Theoretical Model
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Theoretical Model  (Jmol Viewer)

(-) Description

Title :  PDGFB_C3H,BALB,A/J
 
Authors :  Promod (See Reference In Jrnl Records), Koustav Ganguly
Date :  19 Sep 06  (Deposition) - 25 Sep 07  (Release) - 25 Sep 07  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Pdgfb, Swiss-Model (Automated Protein Modelling (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K Ganguly

PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PLATELET DERIVED GROWTH FACTOR BETA POLYPEPTIDE
    ChainsA
    Organism ScientificMUS MUSCULUS
    Other DetailsMUS MUSCULUS DOMESTICUS
    StrainC3H/HEJ;
BALB/CBYJ;
A/J

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (19, 256)

Theoretical Model (19, 256)
No.NameCountTypeFull Name
1ALA16Mod. Amino AcidALANINE
2ARG22Mod. Amino AcidARGININE
3ASN9Mod. Amino AcidASPARAGINE
4ASP3Mod. Amino AcidASPARTIC ACID
5CYS24Mod. Amino AcidCYSTEINE
6GLN15Mod. Amino AcidGLUTAMINE
7GLU24Mod. Amino AcidGLUTAMIC ACID
8GLY3Mod. Amino AcidGLYCINE
9HIS3Mod. Amino AcidHISTIDINE
10ILE17Mod. Amino AcidISOLEUCINE
11LEU12Mod. Amino AcidLEUCINE
12LYS21Mod. Amino AcidLYSINE
13MET3Mod. Amino AcidMETHIONINE
14PHE8Mod. Amino AcidPHENYLALANINE
15PRO18Mod. Amino AcidPROLINE
16SER6Mod. Amino AcidSERINE
17THR17Mod. Amino AcidTHREONINE
18TRP3Mod. Amino AcidTRYPTOPHAN
19VAL32Mod. Amino AcidVALINE

(-) Sites  (0, 0)

(no "Site" information available for 2DZ4)

(-) SS Bonds  (3, 3)

Theoretical Model
No.Residues
1A:14 -A:58
2A:47 -A:95
3A:51 -A:97

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Trp A:38 -Pro A:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2DZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2DZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 2DZ4)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:352
                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeeee..............ee..eeeeeeee.......eeeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeeeee................................................................................................................................................................................................................................................................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dz4 A   7 EPAVIAECKTRTEVFQISRNLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRASQVQMRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETIVTEPAMIAECKTRTEVFEISRFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAIAEPAMIAECKTRTEVFEISFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVIAEPAMIAECKTRTEVFEISLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 358
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2DZ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2DZ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2DZ4)

(-) Gene Ontology  (97, 97)

Theoretical Model(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PDGFB_MOUSE | P312402dz5

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