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(-) Description

Title :  CRYSTAL STRUCTURE OF PYROCOCCUS HORIKOSHII A PLANT- AND PROKARYOTE-CONSERVED (PPC) PROTEIN AT 1.60 RESOLUTION
 
Authors :  L. Lin, H. Nakano, S. Uchiyama, S. Fujimoto, S. Matsunaga, S. Nakamura
Date :  10 Jul 06  (Deposition) - 22 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  A  (6x)
Keywords :  Ppc Domain, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Lin, H. Nakano, S. Nakamura, S. Uchiyama, S. Fujimoto, S. Matsunaga Y. Kobayashi, T. Ohkubo, K. Fukui
Crystal Structure Of Pyrococcus Horikoshii Ppc Protein At 1. 60 A Resolution
Proteins V. 67 505 2007
PubMed-ID: 17295322  |  Reference-DOI: 10.1002/PROT.21270

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PH0802
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953
    Synonym: PLANT- AND PROKARYOTE-CONSERVED PROTEIN, PPC PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A
Biological Unit 2 (6x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:44 , THR A:45 , PHE A:54 , TYR A:61 , GLU A:71 , HIS A:89 , HIS A:91 , HOH A:1145 , HOH A:1272BINDING SITE FOR RESIDUE GOL A 1144

(-) SS Bonds  (0, 0)

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(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:143
 aligned with O58532_PYRHO | O58532 from UniProtKB/TrEMBL  Length:143

    Alignment length:143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140   
         O58532_PYRHO     1 MVTGMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQELKGEKIERKPTKYGLALWEELKL 143
               SCOP domains d2dt4a_ A: automated matches                                                                                                                    SCOP domains
               CATH domains 2dt4A00 A:1-143 Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee....hhhhhhhhhhhhhh...eeeeeeeeeeeeeeeeee....eeeeee...eeeeeeeeeeeeee..eeeeeeeeeee.....eeeeeeeeeeeeeeeeeeeeeee...ee............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2dt4 A   1 MVTGMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQELKGEKIERKPTKYGLALWEELKL 143
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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