Chain A from PDB Type:PROTEIN Length:107
aligned with RTP_BACPZ | E0TY12 from UniProtKB/Swiss-Prot Length:122
Alignment length:117
15 25 35 45 55 65 75 85 95 105 115
RTP_BACPZ 6 RSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqra_ A: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrA00 A:6-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeee----------...eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
2dqr A 6 RSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQI----------EVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
15 25 35 45 55 65 | - 85 95 105 115
73 84
Chain A from PDB Type:PROTEIN Length:107
aligned with RTP_BACSU | P0CI76 from UniProtKB/Swiss-Prot Length:122
Alignment length:117
15 25 35 45 55 65 75 85 95 105 115
RTP_BACSU 6 RSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqra_ A: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrA00 A:6-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........hhhhhhhhhhhhhhh.......hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeee----------...eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
2dqr A 6 RSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQI----------EVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
15 25 35 45 55 65 | - 85 95 105 115
73 84
Chain B from PDB Type:PROTEIN Length:112
aligned with RTP_BACPZ | E0TY12 from UniProtKB/Swiss-Prot Length:122
Alignment length:115
17 27 37 47 57 67 77 87 97 107 117
RTP_BACPZ 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrb_ B: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrB00 B:8-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhhhhhhhh..ee...hhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee.....---...eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
2dqr B 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEG---QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
17 27 37 47 57 67 77 | | 87 97 107 117
79 83
Chain B from PDB Type:PROTEIN Length:112
aligned with RTP_BACSU | P0CI76 from UniProtKB/Swiss-Prot Length:122
Alignment length:115
17 27 37 47 57 67 77 87 97 107 117
RTP_BACSU 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrb_ B: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrB00 B:8-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhhhhhhhh..ee...hhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee.....---...eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
2dqr B 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEG---QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
17 27 37 47 57 67 77 | | 87 97 107 117
79 83
Chain C from PDB Type:PROTEIN Length:106
aligned with RTP_BACPZ | E0TY12 from UniProtKB/Swiss-Prot Length:122
Alignment length:112
20 30 40 50 60 70 80 90 100 110 120
RTP_BACPZ 11 FLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrc_ C: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrC00 C:11-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeee.------..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
2dqr C 11 FLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVK------QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
20 30 40 50 60 70 | - | 90 100 110 120
76 83
Chain C from PDB Type:PROTEIN Length:106
aligned with RTP_BACSU | P0CI76 from UniProtKB/Swiss-Prot Length:122
Alignment length:112
20 30 40 50 60 70 80 90 100 110 120
RTP_BACSU 11 FLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrc_ C: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrC00 C:11-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeeee.------..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
2dqr C 11 FLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVK------QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
20 30 40 50 60 70 | - | 90 100 110 120
76 83
Chain D from PDB Type:PROTEIN Length:109
aligned with RTP_BACPZ | E0TY12 from UniProtKB/Swiss-Prot Length:122
Alignment length:115
17 27 37 47 57 67 77 87 97 107 117
RTP_BACPZ 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrd_ D: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrD00 D:8-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhhhhhhhh......hhhhhhhhh........hhhhhhhhhhhhhhh..eeeeee.------..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
2dqr D 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVK------QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
17 27 37 47 57 67 |- | 87 97 107 117
76 83
Chain D from PDB Type:PROTEIN Length:109
aligned with RTP_BACSU | P0CI76 from UniProtKB/Swiss-Prot Length:122
Alignment length:115
17 27 37 47 57 67 77 87 97 107 117
RTP_BACSU 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
SCOP domains d2dqrd_ D: Replication terminator protein (RTP) SCOP domains
CATH domains 2dqrD00 D:8-122 'winged helix' repressor DNA binding domain CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhhhhhhhh......hhhhhhhhh........hhhhhhhhhhhhhhh..eeeeee.------..eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
2dqr D 8 STGFLVKQRAFLKLYMITMTEQERLYGLKLLKVLQSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVK------QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKALSDNF 122
17 27 37 47 57 67 |- | 87 97 107 117
76 83
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |