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(-) Description

Title :  SOLUTION STRUCTURE OF THE THAP DOMAIN OF THE HUMAN THAP DOMAIN-CONTAINING PROTEIN 2
 
Authors :  K. Miyamoto, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  08 Dec 05  (Deposition) - 08 Jun 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Thap Domain-Containing Protein 2, Thap2, Thap, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Miyamoto, T. Kigawa, T. Tomizawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The Thap Domain Of The Human Thap Domain-Containing Protein 2
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THAP DOMAIN-CONTAINING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System Plasmid: P050302-85
    Expression System Vector Type: PLASMID
    Fragment: THAP
    Gene: THAP2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:12 , CYS A:17 , CYS A:60 , HIS A:63BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2D8R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2D8R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2D8R)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_THAPPS50950 Zinc finger THAP-type profileTHAP2_HUMAN1-80  1A:8-87

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003080861ENSE00001194720chr12:72057784-72058360577THAP2_HUMAN1-24241A:8-3124
1.2ENST000003080862ENSE00001194713chr12:72067983-72068178196THAP2_HUMAN24-89661A:31-9464
1.3ENST000003080863ENSE00001322300chr12:72070469-720744173949THAP2_HUMAN90-2281391A:95-99 (gaps)8

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with THAP2_HUMAN | Q9H0W7 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:121
                                   1                                                                                                                 
                                   | 3        13        23        33        43        53        63        73        83        93       103       113 
          THAP2_HUMAN     - -------MPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLTGQTRRLKMDAVPTIFDFCTHIKSMKLKSRNLLKKNNSCSPAGPSNLKSN 114
               SCOP domains -------d2d8ra1 A:8-93 THAP domain-containing protein 2                                       ---------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................ee...hhhhhhhhhhhh...........ee...................................-------------------...---.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------ZF_THAP  PDB: A:8-87 UniProt: 1-80                                              ---------------------------------- PROSITE
           Transcript 1 (1) -------Exon 1.1  PDB: A:8-31   -----------------------------------------------------------------Exon 1.3 UniProt: 90-228  Transcript 1 (1)
           Transcript 1 (2) ------------------------------Exon 1.2  PDB: A:31-94 UniProt: 24-89 [INCOMPLETE]                ------------------------- Transcript 1 (2)
                 2d8r A   1 GSSGSSGMPTNCAAAGCATTYNKHINISFHRFPLDPKRRKEWVRLVRRKNFVPGKHTFLCSKHFEASCFDLTGQTRRLKMDAVPTIFDFCTHIS-------------------GPS---SG  99
                                    10        20        30        40        50        60        70        80        90   |     -         -   | |  98 
                                                                                                                        94                  95 |  98 
                                                                                                                                              97
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2D8R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2D8R)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (THAP2_HUMAN | Q9H0W7)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
cellular component
    GO:0005730    nucleolus    A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.

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