Chain A from PDB Type:PROTEIN Length:122
aligned with SSRP_THET8 | Q8RR57 from UniProtKB/Swiss-Prot Length:144
Alignment length:122
11 21 31 41 51 61 71 81 91 101 111 121
SSRP_THET8 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
SCOP domains d2czja1 A:2-123 Small protein B (SmpB) SCOP domains
CATH domains 2czjA00 A:2-123 [code=2.40.280.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...ee............eeeee....hhhhhhhhh........eeee....eeee....................ee...hhhhhhhhhhh........eeeeeee.....eeeeee..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------SSRP ----------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
2czj A 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
11 21 31 41 51 61 71 81 91 101 111 121
Chain B from PDB Type:RNA Length:62
2czj B 1 GGGGGUGAAACGGUCUCGACAGGGGUUCGCCUUUGGACGUGGGuuCGACUCCCACCACCUCC 72
10 20 30 || 50 || 60 70
35| 54-5MU
46 55-PSU
Chain C from PDB Type:PROTEIN Length:118
aligned with SSRP_THET8 | Q8RR57 from UniProtKB/Swiss-Prot Length:144
Alignment length:122
11 21 31 41 51 61 71 81 91 101 111 121
SSRP_THET8 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
SCOP domains d2czjc1 C:2-123 Small protein B (SmpB) SCOP domains
CATH domains 2czjC00 C:2-123 [code=2.40.280.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...ee.hhhhhh..eeeeeeeee..hhhhhhhhhh.........eee....eee........----.........eeee.hhhhhhhhh.........eeeeeeee.....eeeeeeee... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------SSRP ----------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
2czj C 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY----YANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
11 21 31 41 51 61 | | 71 81 91 101 111 121
63 68
Chain D from PDB Type:RNA Length:62
2czj D 1 GGGGGUGAAACGGUCUCGACAGGGGUUCGCCUUUGGACGUGGGuuCGACUCCCACCACCUCC 72
10 20 30 || 50 || 60 70
35| 54-5MU
46 55-PSU
Chain E from PDB Type:PROTEIN Length:122
aligned with SSRP_THET8 | Q8RR57 from UniProtKB/Swiss-Prot Length:144
Alignment length:122
11 21 31 41 51 61 71 81 91 101 111 121
SSRP_THET8 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
SCOP domains d2czje1 E:2-123 Small protein B (SmpB) SCOP domains
CATH domains 2czjE00 E:2-123 [code=2.40.280.10, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eee............eeeee....hhhhhhhhhh.......eeee....eeee....................ee...hhhhhhhhhhh........eeeeeee.....eeeeee..... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------SSRP ----------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
2czj E 2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
11 21 31 41 51 61 71 81 91 101 111 121
Chain F from PDB Type:RNA Length:62
2czj F 1 GGGGGUGAAACGGUCUCGACAGGGGUUCGCCUUUGGACGUGGGuuCGACUCCCACCACCUCC 72
10 20 30 || 50 || 60 70
35| 54-5MU
46 55-PSU
Chain G from PDB Type:PROTEIN Length:120
aligned with SSRP_THET8 | Q8RR57 from UniProtKB/Swiss-Prot Length:144
Alignment length:120
13 23 33 43 53 63 73 83 93 103 113 123
SSRP_THET8 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
SCOP domains d2czjg1 G:4-123 Small protein B (SmpB) SCOP domains
CATH domains 2czjG00 G:4-123 [code=2.40.280.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ....hhhhhh.....eeeeee..hhhhhhhhhh.........eee....eee.....................eeee.hhhhhhhhh........eeeeeeeee.....eeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------SSRP ----------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
2czj G 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
13 23 33 43 53 63 73 83 93 103 113 123
Chain H from PDB Type:RNA Length:62
2czj H 1 GGGGGUGAAACGGUCUCGACAGGGGUUCGCCUUUGGACGUGGGuuCGACUCCCACCACCUCC 72
10 20 30 || 50 || 60 70
35| 54-5MU
46 55-PSU
| Legend: |
|
→ Mismatch |
(orange background) |
| |
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
| |
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
| |
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
| |
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
Description
