2CH5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN N-ACETYLGLUCOSAMINE KINASE IN COMPLEX WITH N-ACETYLGLUCOSAMINE

Authors :   W. A. Weihofen, M. Berger, H. Chen, W. Saenger, S. Hinderlich

Date :   13 Mar 06 (Deposition) - 18 Sep 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Transferase, N-Acetylglucosamine, Glcnac, Sugar Kinase, Ribonuclease H Fold, Sugar Kinase/Hsp70/Actin Superfamily, Domain Rotation, Open Conformation, Closed Conformation, Hypothetical Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. A. Weihofen, M. Berger, H. Chen, W. Saenger, S. Hinderlich
Structures Of Human N-Acetylglucosamine Kinase In Two Complexes With N-Acetylglucosamine And With Adp/Glucose: Insights Into Substrate Specificity And Regulation.
J. Mol. Biol. V. 364 388 2006
PubMed-ID: 17010375 | Reference-DOI: 10.1016/J.JMB.2006.08.085

Molecule 1 - NAGK PROTEIN
	Chains	:	A, B, C, D
	EC Number	:	2.7.1.59
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-2T
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CDNA FROM THE RESOURCE CENTER OF THE GERMAN HUMAN GENOME PROJECT
	Synonym	:	HUMAN N-ACETYLGLUCOSAMINE KINASE, PROTEIN TMP_LOCUS_2, GLCNAC KINASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	GOL	5	Ligand/Ion	GLYCEROL
2	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NDG	-1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	NAG	1	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:36 , TRP A:38 , SER A:76 , GLY A:77 , ASP A:107 , ILE A:124 , GLY A:128 , SER A:129 , ASN A:130 , GLY A:145 , TRP A:146 , GLY A:147 , ASP A:152 , GOL A:501 , HOH A:2142 , HOH A:2143 , HOH A:2313 , HOH A:2314 , HOH A:2315	BINDING SITE FOR RESIDUE NAG A 500
2	AC2	SOFTWARE	ASN B:36 , TRP B:38 , GLY B:77 , ASP B:107 , ILE B:124 , GLY B:128 , SER B:129 , ASN B:130 , GLY B:145 , TRP B:146 , GLY B:147 , ASP B:152 , GOL B:501 , HOH B:2141 , HOH B:2142 , HOH B:2305 , HOH B:2306	BINDING SITE FOR RESIDUE NAG B 500
3	AC3	SOFTWARE	ASN C:36 , TRP C:38 , SER C:76 , GLY C:77 , ASP C:107 , ILE C:124 , GLY C:128 , SER C:129 , ASN C:130 , GLY C:145 , TRP C:146 , GLY C:147 , ASP C:152 , GOL C:501 , HOH C:2144 , HOH C:2145 , HOH C:2314 , HOH C:2315 , HOH C:2316	BINDING SITE FOR RESIDUE NAG C 500
4	AC4	SOFTWARE	GLY D:12 , TRP D:38 , SER D:76 , GLY D:77 , ASP D:107 , ILE D:124 , GLY D:128 , SER D:129 , ASN D:130 , GLY D:145 , TRP D:146 , GLY D:147 , ASP D:152 , GOL D:501 , HOH D:2146 , HOH D:2147 , HOH D:2332 , HOH D:2333	BINDING SITE FOR RESIDUE NDG D 500
5	AC5	SOFTWARE	TRP A:38 , GLY A:77 , ASP A:79 , ARG A:132 , GLY A:145 , NAG A:500 , LEU B:198	BINDING SITE FOR RESIDUE GOL A 501
6	AC6	SOFTWARE	LEU A:198 , TRP B:38 , GLY B:77 , ASP B:79 , ARG B:132 , GLY B:145 , NAG B:500 , HOH B:2158	BINDING SITE FOR RESIDUE GOL B 501
7	AC7	SOFTWARE	TRP C:38 , GLY C:77 , ASP C:79 , ARG C:132 , GLY C:145 , NAG C:500 , HOH C:2145 , HOH C:2317 , LEU D:198	BINDING SITE FOR RESIDUE GOL C 501
8	AC8	SOFTWARE	TRP D:38 , GLY D:77 , ASP D:79 , ARG D:132 , GLY D:145 , NDG D:500 , HOH D:2146 , HOH D:2334	BINDING SITE FOR RESIDUE GOL D 501
9	AC9	SOFTWARE	TRP D:273 , LYS D:306 , PHE D:338	BINDING SITE FOR RESIDUE GOL D 502

(no "SS Bond" information available for 2CH5)

(no "Cis Peptide Bond" information available for 2CH5)

Asymmetric Unit (2, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029763	W	38	R	NAGK_HUMAN	Polymorphism	17856147	A/B/C/D	W	38	R
2	UniProt	VAR_029764	A	60	V	NAGK_HUMAN	Polymorphism	17849984	A/B/C/D	A	60	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029763	W	38	R	NAGK_HUMAN	Polymorphism	17856147	A/B	W	38	R
2	UniProt	VAR_029764	A	60	V	NAGK_HUMAN	Polymorphism	17849984	A/B	A	60	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_029763	W	38	R	NAGK_HUMAN	Polymorphism	17856147	C/D	W	38	R
2	UniProt	VAR_029764	A	60	V	NAGK_HUMAN	Polymorphism	17849984	C/D	A	60	V

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2CH5)

Asymmetric Unit (10, 40)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.3d	ENST00000244204	3d	ENSE00001893308	chr2:71295431-71295842	412	NAGK_HUMAN	1-10	10	4	A:1-10 B:1-10 C:1-10 D:1-10	10 10 10 10
1.3s	ENST00000244204	3s	ENSE00001643647	chr2:71297632-71297716	85	NAGK_HUMAN	10-38	29	4	A:10-38 B:10-38 C:10-38 D:10-38	29 29 29 29
1.3w	ENST00000244204	3w	ENSE00001657058	chr2:71297871-71297969	99	NAGK_HUMAN	39-71	33	4	A:39-71 B:39-71 C:39-71 D:39-71	33 33 33 33
1.3z	ENST00000244204	3z	ENSE00001619904	chr2:71298816-71298957	142	NAGK_HUMAN	72-119	48	4	A:72-119 B:72-119 C:72-119 D:72-119	48 48 48 48
1.4e	ENST00000244204	4e	ENSE00001658342	chr2:71299771-71299881	111	NAGK_HUMAN	119-156	38	4	A:119-156 B:119-156 C:119-156 D:119-156	38 38 38 38
1.4i	ENST00000244204	4i	ENSE00002143950	chr2:71300612-71300724	113	NAGK_HUMAN	156-193	38	4	A:156-193 B:156-193 C:156-193 D:156-193	38 38 38 38
1.5e	ENST00000244204	5e	ENSE00001787623	chr2:71302685-71302772	88	NAGK_HUMAN	194-223	30	4	A:194-223 B:194-223 C:194-223 D:194-223	30 30 30 30
1.5m	ENST00000244204	5m	ENSE00001805341	chr2:71303734-71303831	98	NAGK_HUMAN	223-255	33	4	A:223-255 B:223-255 C:223-255 D:223-255	33 33 33 33
1.6c	ENST00000244204	6c	ENSE00001721052	chr2:71304688-71304766	79	NAGK_HUMAN	256-282	27	4	A:256-282 B:256-282 C:256-282 D:256-282	27 27 27 27
1.7j	ENST00000244204	7j	ENSE00001850708	chr2:71305448-71305998	551	NAGK_HUMAN	282-344	63	4	A:282-344 (gaps) B:282-344 (gaps) C:282-344 (gaps) D:282-344 (gaps)	63 63 63 63

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:344
 aligned with NAGK_HUMAN | Q9UJ70 from UniProtKB/Swiss-Prot  Length:344

    Alignment length:347
                               1                                                                                                                                                                                                                                                                                                                                                       
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           NAGK_HUMAN     - ---MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
               SCOP domains ---d2ch5a2 A:1-117 N-acetylglucosamine kinase, NAGK                                                                     d2ch5a1 A:118-344 N-acetylglucosamine kinase, NAGK                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhh...eeeeee...eeeeee.....eeeee..........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhhh---......eeeeeee...hhhhhhhhhhhh.......hhhhheeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------R---------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ---Exon 1.3d ----------------------------Exon 1.3w  PDB: A:39-71          Exon 1.3z  PDB: A:72-119 UniProt: 72-119        ------------------------------------Exon 1.4i  PDB: A:156-193             Exon 1.5e  PDB: A:194-223     --------------------------------Exon 1.6c  PDB: A:256-282  -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.3s  PDB: A:10-38      --------------------------------------------------------------------------------Exon 1.4e  PDB: A:119-156             ------------------------------------------------------------------Exon 1.5m  PDB: A:223-255        --------------------------Exon 1.7j  PDB: A:282-344 (gaps) UniProt: 282-344               Transcript 1 (2)
                 2ch5 A  -2 PQFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGR---AQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287   |   297       307       317       327       337       
                                                                                                                                                                                                                                                                                                                               291 295

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with NAGK_HUMAN | Q9UJ70 from UniProtKB/Swiss-Prot  Length:344

    Alignment length:347
                               1                                                                                                                                                                                                                                                                                                                                                       
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           NAGK_HUMAN     - ---MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
               SCOP domains d2ch5b2 B:-2-117 N-acetylglucosamine kinase, NAGK                                                                       d2ch5b1 B:118-344 N-acetylglucosamine kinase, NAGK                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhh...eeeeee...eeeeee.....eeeee..........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhhhhh-----..eeeeeee...hhhhhhhhhhhh.......hhhhheeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------R---------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ---Exon 1.3d ----------------------------Exon 1.3w  PDB: B:39-71          Exon 1.3z  PDB: B:72-119 UniProt: 72-119        ------------------------------------Exon 1.4i  PDB: B:156-193             Exon 1.5e  PDB: B:194-223     --------------------------------Exon 1.6c  PDB: B:256-282  -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.3s  PDB: B:10-38      --------------------------------------------------------------------------------Exon 1.4e  PDB: B:119-156             ------------------------------------------------------------------Exon 1.5m  PDB: B:223-255        --------------------------Exon 1.7j  PDB: B:282-344 (gaps) UniProt: 282-344               Transcript 1 (2)
                 2ch5 B  -2 PQFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREI-----FSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     |   - |     307       317       327       337       
                                                                                                                                                                                                                                                                                                                                 293   299

Chain C from PDB  Type:PROTEIN  Length:342
 aligned with NAGK_HUMAN | Q9UJ70 from UniProtKB/Swiss-Prot  Length:344

    Alignment length:347
                               1                                                                                                                                                                                                                                                                                                                                                       
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           NAGK_HUMAN     - ---MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
               SCOP domains d2ch5c2 C:-2-117 N-acetylglucosamine kinase, NAGK                                                                       d2ch5c1 C:118-344 N-acetylglucosamine kinase, NAGK                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeee....eeeeeee........hhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhh...eeeeee...eeeeee.....eeeee..........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhhh.-----...eeeeeee...hhhhhhhhhhhh.......hhhhheeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------R---------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ---Exon 1.3d ----------------------------Exon 1.3w  PDB: C:39-71          Exon 1.3z  PDB: C:72-119 UniProt: 72-119        ------------------------------------Exon 1.4i  PDB: C:156-193             Exon 1.5e  PDB: C:194-223     --------------------------------Exon 1.6c  PDB: C:256-282  -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.3s  PDB: C:10-38      --------------------------------------------------------------------------------Exon 1.4e  PDB: C:119-156             ------------------------------------------------------------------Exon 1.5m  PDB: C:223-255        --------------------------Exon 1.7j  PDB: C:282-344 (gaps) UniProt: 282-344               Transcript 1 (2)
                 2ch5 C  -2 PQFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGRE-----FFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    |    -|      307       317       327       337       
                                                                                                                                                                                                                                                                                                                                292   298

Chain D from PDB  Type:PROTEIN  Length:342
 aligned with NAGK_HUMAN | Q9UJ70 from UniProtKB/Swiss-Prot  Length:344

    Alignment length:347
                               1                                                                                                                                                                                                                                                                                                                                                       
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       
           NAGK_HUMAN     - ---MAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
               SCOP domains d2ch5d2 D:-2-117 N-acetylglucosamine kinase, NAGK                                                                       d2ch5d1 D:118-344 N-acetylglucosamine kinase, NAGK                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee....eeeeeee....eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee....hhhhhhhhhhhhhhhh......eeeeehhhhhhhhhh...eeeeee...eeeeee.....eeeee..........hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhhhhhhhh-----..eeeeeee...hhhhhhhhhhhh.......hhhhheeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------R---------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ---Exon 1.3d ----------------------------Exon 1.3w  PDB: D:39-71          Exon 1.3z  PDB: D:72-119 UniProt: 72-119        ------------------------------------Exon 1.4i  PDB: D:156-193             Exon 1.5e  PDB: D:194-223     --------------------------------Exon 1.6c  PDB: D:256-282  -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.3s  PDB: D:10-38      --------------------------------------------------------------------------------Exon 1.4e  PDB: D:119-156             ------------------------------------------------------------------Exon 1.5m  PDB: D:223-255        --------------------------Exon 1.7j  PDB: D:282-344 (gaps) UniProt: 282-344               Transcript 1 (2)
                 2ch5 D  -2 PQFMAAIYGGVEGGGTRSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREI-----FSSFTLMKLRHSSALGGASLGARHIGHLLPMDYSANAIAFYSYTFS 344
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287     |   - |     307       317       327       337       
                                                                                                                                                                                                                                                                                                                                 293   299

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: BadF/BadG/BcrA/BcrD-like (6)

Protein domain: N-acetylglucosamine kinase, NAGK (2)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d2ch5a1	A:118-344
1b	d2ch5a2	A:1-117
1c	d2ch5b1	B:118-344
1d	d2ch5b2	B:-2-117
1e	d2ch5c1	C:118-344
1f	d2ch5c2	C:-2-117
1g	d2ch5d1	D:118-344
1h	d2ch5d2	D:-2-117

(no "CATH Domain" information available for 2CH5)

(no "Pfam Domain" information available for 2CH5)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (NAGK_HUMAN | Q9UJ70)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0045127	N-acetylglucosamine kinase activity	Catalysis of the reaction: N-acetyl-D-glucosamine + ATP = N-acetyl-D-glucosamine 6-phosphate + ADP + 2 H(+).
	GO:0009384	N-acylmannosamine kinase activity	Catalysis of the reaction: ATP + N-acyl-D-mannosamine = ADP + N-acyl-D-mannosamine 6-phosphate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006044	N-acetylglucosamine metabolic process	The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein.
	GO:0006051	N-acetylmannosamine metabolic process	The chemical reactions and pathways involving N-acetylmannosamine, the acetylated derivative of mannosamine, 2-amino-2-deoxymannose.
	GO:0019262	N-acetylneuraminate catabolic process	The chemical reactions and pathways resulting in the breakdown of N-acetylneuraminate, the anion of 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto-non-3-ulosonic acid.
	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
	GO:0046835	carbohydrate phosphorylation	The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2ch5)

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	2ch5
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	NAGK_HUMAN \| Q9UJ70
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	2.7.1.59
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	NAGK_HUMAN \| Q9UJ70
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	NAGK_HUMAN \| Q9UJ70	:	2ch6

2ch6	CRYSTAL STRUCTURE OF HUMAN N-ACETYLGLUCOSAMINE KINASE IN COMPLEX WITH ADP AND GLUCOSE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 8)

PROSITE Motifs (0, 0)

Exons (10, 40)

Sequences/Alignments

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SCOP Domains (1, 8)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (15, 15)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

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