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(-) Description

Title :  NEGATIVE STAIN EM RECONSTRUCTION OF M.TUBERCULOSIS ACR1(HSP 16.3) FITTED WITH WHEAT SHSP DIMER
 
Authors :  C. K. Kennaway, J. L. P. Benesch, U. Gohlke, L. Wang, C. V. Robinson, E. V. Orlova, H. R. Saibil, N. H. Keep
Date :  05 Aug 05  (Deposition) - 22 Aug 05  (Release) - 28 Jan 15  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  16.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Small Heat Shock Protein, Alpha-Crystallin, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. K. Kennaway, J. L. P. Benesch, U. Gohlke, L. Wang, C. V. Robinson, E. V. Orlova, H. R. Saibil, N. H. Keep
Dodecameric Structure Of The Small Heat Shock Protein Acr1 From Mycobacterium Tuberculosis.
J. Biol. Chem. V. 280 33419 2005
PubMed-ID: 16046399  |  Reference-DOI: 10.1074/JBC.M504263200

(-) Compounds

Molecule 1 - HEAT SHOCK PROTEIN 16.9B
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Organism Common: WHEAT
    Organism Scientific: TRITICUM AESTIVUM
    Organism Taxid: 4565
    Other Details: THIS ENTRY CONTAINS THE COORDINATES OF WHEAT HSP 16.9 WHICH HAVE BEEN FITTED INTO THE CRYO-EM RECONSTRUCTION OF HSP 16.3 FROM M.TUBERCULOSIS. THE COMPND AND SOURCE RECORDS GIVE DETAILS OF THE PROTEIN REPRESENTED BY THE COORDINATES, RATHER THAN THE PROTEIN FROM WHICH THE EM MAP WAS DERIVED
    Other Details - Source: THE PROTEIN MODEL WAS OBTAINED FROM PDB ENTRY 1GME

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BYU)

(-) Sites  (0, 0)

(no "Site" information available for 2BYU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BYU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2BYU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BYU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BYU)

(-) Exons   (0, 0)

(no "Exon" information available for 2BYU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu A  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain B from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu B  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain C from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu C  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain D from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu D  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain E from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu E  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain F from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu F  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain G from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu G  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain H from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu H  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain I from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu I  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain J from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu J  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain K from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee....hhh.eeeeee...eeeeee...........eeee.......eeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu K  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146     


Chain L from PDB  Type:PROTEIN  Length:101
 aligned with HS16B_WHEAT | Q41560 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:109
                                    52        62        72        82        92       102       112       122       132       142         
          HS16B_WHEAT    43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...eeeeeee........eeeeee...eeeeeeee..........eee.....eeeeeeee.....hhhhheeeee..eeeeeee..--------...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2byu L  43 NARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKA--------AIQISG 151
                                    52        62        72        82        92       102       112       122       132    |    -   |     
                                                                                                                        137      146
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2BYU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BYU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BYU)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (HS16B_WHEAT | Q41560)
biological process
    GO:0051260    protein homooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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(no "Cis Peptide Bonds" information available for 2byu)
 

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  HS16B_WHEAT | Q41560
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HS16B_WHEAT | Q41560: 1gme 2h50 2h53

(-) Related Entries Specified in the PDB File

1gme CRYSTAL STRUCTURE AND ASSEMBLY OF AN EUKARYOTIC SMALL HEAT SHOCK PROTEIN RELATED ID: EMD-1149 RELATED DB: EMDB DODECAMERIC STRUCTURE OF THE SMALL HEAT SHOCK PROTEIN ACR1 FROM MYCOBACTERIUM TUBERCULOSIS