Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CMCI-N160 APO-STRUCTURE
 
Authors :  L. M. Oster, D. R. Lester, A. Terwisscha Van Scheltinga, M. Svenda, C. I. Andersson
Date :  10 Mar 05  (Deposition) - 09 Mar 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Cephamycin Biosynthesis, Porin (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. M. Oster, D. R. Lester, A. Terwisscha Van Scheltinga, M. Svenda, M. Van Lun, C. Genereux, I. Andersson
Insights Into Cephamycin Biosynthesis: The Crystal Structure Of Cmci From Streptomyces Clavuligerus
J. Mol. Biol. V. 358 546 2006
PubMed-ID: 16527306  |  Reference-DOI: 10.1016/J.JMB.2006.02.004

(-) Compounds

Molecule 1 - CEPHALOSPORIN HYDROXYLASE CMCI
    ChainsA, B, C, D, E, F, G, H, I, J, K, L
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET32 XA/LIC
    Expression System Taxid562
    MutationYES
    Organism ScientificSTREPTOMYCES CLAVULIGERUS
    Organism Taxid1901
    Other DetailsCIS-PEPTIDE BOND BETWEEEN HIS153 AND PRO154. TYR91 AND ASP187 ARE RAMACHANDRAN OUTLIERS

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABCDEFGHIJKL
Biological Unit 1 (1x)ABCDEF      
Biological Unit 2 (1x)      GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2BM8)

(-) Sites  (0, 0)

(no "Site" information available for 2BM8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2BM8)

(-) Cis Peptide Bonds  (13, 13)

Asymmetric Unit
No.Residues
1His A:153 -Pro A:154
2His B:153 -Pro B:154
3His C:153 -Pro C:154
4His D:153 -Pro D:154
5His E:153 -Pro E:154
6His F:153 -Pro F:154
7His G:153 -Pro G:154
8His H:153 -Pro H:154
9Arg I:149 -Glu I:150
10His I:153 -Pro I:154
11His J:153 -Pro J:154
12His K:153 -Pro K:154
13His L:153 -Pro L:154

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2BM8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2BM8)

(-) Exons   (0, 0)

(no "Exon" information available for 2BM8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8a1 A:2-233 Cephalosporin hydroxylase CmcI                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee........hhhhh..eeeee.....hhhhhhhh.....eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 A   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  

Chain B from PDB  Type:PROTEIN  Length:233
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8b_ B: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee....hhhhh.........eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 B   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   

Chain C from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8c_ C: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee.....hhhhhh.......eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 C   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  

Chain D from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8d_ D: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhhh..................eehhhhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee........hhhhh..eeeee.....hhhhhhh......eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 D   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  

Chain E from PDB  Type:PROTEIN  Length:233
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8e_ E: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eehhhhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee.hhhhh..hhhhh..eeeee.....hhhhhh.......eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhh...eee.............eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 E   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   

Chain F from PDB  Type:PROTEIN  Length:233
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8f_ F: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee....hhhhhhhhhhh...eeeee....hhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhh....eeee.............eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 F   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   

Chain G from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  
         B5GLB3_STRC2     3 DYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8g_ G: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..................eee.hhhhhh...........eee..eee..hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee.hhhhh..hhhhh..eeeee.....hhhhhh.......eeeee....hhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhh....eeee.............eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 G   3 DYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  

Chain H from PDB  Type:PROTEIN  Length:233
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8h_ H: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh...........eee..eee..hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeeee........hhhhh..eeeee....hhhhhhhhhhh...eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 H   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   

Chain I from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8i_ I: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee..................eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 I   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  

Chain J from PDB  Type:PROTEIN  Length:232
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:232
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8j_ J: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhhhhh..................eehhhhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh....eeeee.........hhhhh..eeee.......hhhhhhhh....eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 J   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231  

Chain K from PDB  Type:PROTEIN  Length:231
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:231
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 
         B5GLB3_STRC2     3 DYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
               SCOP domains d2bm8k_ K: Cephalosporin hydroxylase CmcI                                                                                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee.....hhhhhhhhhh...eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh....eeee.............eeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 K   3 DYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVA 233
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 

Chain L from PDB  Type:PROTEIN  Length:233
 aligned with B5GLB3_STRC2 | B5GLB3 from UniProtKB/TrEMBL  Length:236

    Alignment length:233
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   
         B5GLB3_STRC2     2 NDYSRQNFLDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDDAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLLSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
               SCOP domains d2bm8l_ L: Cephalosporin hydroxylase CmcI                                                                                                                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhh..................eee.hhhhhh............ee..ee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh...eeeeee........hhhhh..eeeee.....hhhhhh.......eeeee....hhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhh.....eeehhhhh........eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2bm8 L   2 NDYSRQNFQDLNLFRGLGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLYANASSQLDRGVLRRVAA 234
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2BM8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2BM8)

(-) Gene Ontology  (6, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (B5GLB3_STRC2 | B5GLB3)
molecular function
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
biological process
    GO:0008610    lipid biosynthetic process    The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2bm8)
 
  Sites
(no "Sites" information available for 2bm8)
 
  Cis Peptide Bonds
    Arg I:149 - Glu I:150   [ RasMol ]  
    His A:153 - Pro A:154   [ RasMol ]  
    His B:153 - Pro B:154   [ RasMol ]  
    His C:153 - Pro C:154   [ RasMol ]  
    His D:153 - Pro D:154   [ RasMol ]  
    His E:153 - Pro E:154   [ RasMol ]  
    His F:153 - Pro F:154   [ RasMol ]  
    His G:153 - Pro G:154   [ RasMol ]  
    His H:153 - Pro H:154   [ RasMol ]  
    His I:153 - Pro I:154   [ RasMol ]  
    His J:153 - Pro J:154   [ RasMol ]  
    His K:153 - Pro K:154   [ RasMol ]  
    His L:153 - Pro L:154   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2bm8
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  B5GLB3_STRC2 | B5GLB3
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  B5GLB3_STRC2 | B5GLB3
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B5GLB3_STRC2 | B5GLB32bm9 2br3 2br4 2br5

(-) Related Entries Specified in the PDB File

2bm9 CMCI-N160 IN COMPLEX WITH SAM
2br3 CMCI-D160 MG
2br4 CMCI-D160 MG-SAM
2br5 CMCI-N160 SAH