2Y25 - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE MYOMESIN DOMAINS MY11-MY13

Authors :   N. Pinotsis, S. D. Chatziefthimiou, M. Wilmanns

Date :   13 Dec 10 (Deposition) - 21 Dec 11 (Release) - 07 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.50

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (2x)
Biol. Unit 2: C,D  (2x)

Keywords :   Structural Protein, Sarcomere, M-Band, Immunoglobulin-Like Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Pinotsis, S. D. Chatziefthimiou, F. Berkemeier, F. Beuron, I. M. Mavridis, P. V. Konarev, D. I. Svergun, E. Morris, M. Rief, M. Wilmanns
Superhelical Architecture Of The Myosin Filament-Linking Protein Myomesin With Unusual Elastic Properties.
Plos Biol. V. 10 1261 2012
PubMed-ID: 22347812 | Reference-DOI: 10.1371/JOURNAL.PBIO.1001261

Molecule 1 - MYOMESIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET151
	Expression System Vector Type	:	PLASMID
	Fragment	:	DOMAINS MY11, MY12, MY13, RESIDUES 1357-1667
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	190 KDA CONNECTIN-ASSOCIATED PROTEIN, 190 KDA TITIN-ASSOCIATED PROTEIN, MYOMESIN FAMILY MEMBER 1
	Tissue	:	MUSCLE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (2x)	:	A	B
Biological Unit 2 (2x)	:			C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2Y25)

(no "Site" information available for 2Y25)

Asymmetric Unit

No.	Residues
1	A:1378	-	A:1411
2	C:1378	-	C:1411

Asymmetric Unit

No.	Residues
1	Pro A:1354	-	Phe A:1355
2	Asp A:1599	-	Pro A:1600
3	Asp B:1408	-	Gly B:1409
4	Thr B:1482	-	Tyr B:1483
5	Asp B:1599	-	Pro B:1600
6	Pro C:1354	-	Phe C:1355
7	Asp C:1599	-	Pro C:1600
8	Asp D:1408	-	Gly D:1409
9	Thr D:1482	-	Tyr D:1483
10	Asp D:1599	-	Pro D:1600

Asymmetric Unit (2, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047227	D	1408	N	MYOM1_HUMAN	Polymorphism	3765623	B/D	D	1408	N
2	UniProt	VAR_047228	M	1453	T	MYOM1_HUMAN	Polymorphism	16944397	A/B/C/D	M	1453	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (2, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047227	D	1408	N	MYOM1_HUMAN	Polymorphism	3765623	B	D	1408	N
2	UniProt	VAR_047228	M	1453	T	MYOM1_HUMAN	Polymorphism	16944397	A/B	M	1453	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (2, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_047227	D	1408	N	MYOM1_HUMAN	Polymorphism	3765623	D	D	1408	N
2	UniProt	VAR_047228	M	1453	T	MYOM1_HUMAN	Polymorphism	16944397	C/D	M	1453	T

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2Y25)

Asymmetric Unit (12, 48)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000356443	1	ENSE00001400333	chr18:3220106-3219801	306	MYOM1_HUMAN	-	0	0	-	-
1.2	ENST00000356443	2	ENSE00001543713	chr18:3215249-3214932	318	MYOM1_HUMAN	1-97	97	0	-	-
1.3	ENST00000356443	3	ENSE00001403202	chr18:3193956-3193816	141	MYOM1_HUMAN	97-144	48	0	-	-
1.4	ENST00000356443	4	ENSE00001240625	chr18:3189085-3188746	340	MYOM1_HUMAN	144-257	114	0	-	-
1.5	ENST00000356443	5	ENSE00001240622	chr18:3187635-3187478	158	MYOM1_HUMAN	258-310	53	0	-	-
1.6	ENST00000356443	6	ENSE00001240619	chr18:3176132-3176040	93	MYOM1_HUMAN	310-341	32	0	-	-
1.7	ENST00000356443	7	ENSE00001240615	chr18:3174206-3174118	89	MYOM1_HUMAN	341-371	31	0	-	-
1.8	ENST00000356443	8	ENSE00001240608	chr18:3173998-3173936	63	MYOM1_HUMAN	371-392	22	0	-	-
1.9	ENST00000356443	9	ENSE00001240603	chr18:3168979-3168815	165	MYOM1_HUMAN	392-447	56	0	-	-
1.10	ENST00000356443	10	ENSE00001240598	chr18:3164437-3164276	162	MYOM1_HUMAN	447-501	55	0	-	-
1.11	ENST00000356443	11	ENSE00001240595	chr18:3155086-3154945	142	MYOM1_HUMAN	501-548	48	0	-	-
1.12	ENST00000356443	12	ENSE00001240590	chr18:3151891-3151692	200	MYOM1_HUMAN	548-615	68	0	-	-
1.13	ENST00000356443	13	ENSE00001240585	chr18:3149199-3149143	57	MYOM1_HUMAN	615-634	20	0	-	-
1.14	ENST00000356443	14	ENSE00001240581	chr18:3142061-3141937	125	MYOM1_HUMAN	634-675	42	0	-	-
1.15	ENST00000356443	15	ENSE00001240577	chr18:3135728-3135545	184	MYOM1_HUMAN	676-737	62	0	-	-
1.16	ENST00000356443	16	ENSE00001240573	chr18:3134822-3134648	175	MYOM1_HUMAN	737-795	59	0	-	-
1.17	ENST00000356443	17	ENSE00001240567	chr18:3131494-3131373	122	MYOM1_HUMAN	795-836	42	0	-	-
1.18	ENST00000356443	18	ENSE00001413714	chr18:3129517-3129230	288	MYOM1_HUMAN	836-932	97	0	-	-
1.19	ENST00000356443	19	ENSE00001240558	chr18:3126895-3126699	197	MYOM1_HUMAN	932-997	66	0	-	-
1.20	ENST00000356443	20	ENSE00001240553	chr18:3119993-3119867	127	MYOM1_HUMAN	998-1040	43	0	-	-
1.21	ENST00000356443	21	ENSE00001240549	chr18:3116513-3116329	185	MYOM1_HUMAN	1040-1101	62	0	-	-
1.22	ENST00000356443	22	ENSE00001240541	chr18:3112410-3112296	115	MYOM1_HUMAN	1102-1140	39	0	-	-
1.23	ENST00000356443	23	ENSE00001240535	chr18:3102628-3102472	157	MYOM1_HUMAN	1140-1192	53	0	-	-
1.24	ENST00000356443	24	ENSE00001240526	chr18:3100424-3100318	107	MYOM1_HUMAN	1192-1228	37	0	-	-
1.25	ENST00000356443	25	ENSE00001240522	chr18:3100201-3100157	45	MYOM1_HUMAN	1228-1243	16	0	-	-
1.26b	ENST00000356443	26b	ENSE00001240516	chr18:3094304-3094168	137	MYOM1_HUMAN	1243-1288	46	0	-	-
1.27	ENST00000356443	27	ENSE00001592917	chr18:3090800-3090656	145	MYOM1_HUMAN	1289-1337	49	4	A:1352-1356 B:1353-1354 C:1352-1356 D:1353-1354	5 2 5 2
1.28	ENST00000356443	28	ENSE00001709505	chr18:3089594-3089535	60	MYOM1_HUMAN	1337-1357	21	4	A:1357-1357 B:1354-1357 (gaps) C:1357-1357 D:1354-1357 (gaps)	1 21 1 21
1.29	ENST00000356443	29	ENSE00001645638	chr18:3089239-3089172	68	MYOM1_HUMAN	1357-1379	23	4	A:1357-1379 B:1357-1379 C:1357-1379 D:1357-1379	23 23 23 23
1.30	ENST00000356443	30	ENSE00001692605	chr18:3086149-3086036	114	MYOM1_HUMAN	1380-1417	38	4	A:1380-1417 (gaps) B:1380-1417 C:1380-1417 (gaps) D:1380-1417	38 38 38 38
1.31	ENST00000356443	31	ENSE00001738311	chr18:3085130-3085043	88	MYOM1_HUMAN	1418-1447	30	4	A:1418-1447 B:1418-1447 C:1418-1447 D:1418-1447	30 30 30 30
1.32	ENST00000356443	32	ENSE00001676386	chr18:3084025-3083987	39	MYOM1_HUMAN	1447-1460	14	4	A:1447-1460 B:1447-1460 C:1447-1460 D:1447-1460	14 14 14 14
1.33	ENST00000356443	33	ENSE00001782333	chr18:3083892-3083787	106	MYOM1_HUMAN	1460-1495	36	4	A:1460-1495 B:1460-1495 C:1460-1495 D:1460-1495	36 36 36 36
1.34	ENST00000356443	34	ENSE00001735824	chr18:3079340-3079177	164	MYOM1_HUMAN	1495-1550	56	4	A:1495-1550 B:1495-1550 C:1495-1550 D:1495-1550	56 56 56 56
1.35	ENST00000356443	35	ENSE00001803821	chr18:3075759-3075723	37	MYOM1_HUMAN	1550-1562	13	4	A:1550-1562 B:1550-1562 C:1550-1562 D:1550-1562	13 13 13 13
1.36	ENST00000356443	36	ENSE00001731412	chr18:3075474-3075452	23	MYOM1_HUMAN	1562-1570	9	4	A:1562-1570 B:1562-1570 C:1562-1570 D:1562-1570	9 9 9 9
1.37	ENST00000356443	37	ENSE00001618984	chr18:3071887-3071832	56	MYOM1_HUMAN	1570-1588	19	4	A:1570-1588 B:1570-1588 C:1570-1588 D:1570-1588	19 19 19 19
1.38	ENST00000356443	38	ENSE00001615622	chr18:3067553-3066805	749	MYOM1_HUMAN	1589-1685	97	4	A:1589-1666 B:1589-1666 C:1589-1666 D:1589-1666	78 78 78 78

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:310
 aligned with MYOM1_HUMAN | P52179 from UniProtKB/Swiss-Prot  Length:1685

    Alignment length:373
                                  1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663   
         MYOM1_HUMAN   1294 IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----------------------------------------------------------..eeeeeeeeeee...eeeeeeeee......eeeeee..eee.....-----..eeeee..........eeeeee....eeeeee...hhhhhhhhhhhhhhhhh.....eeee...eeeeeee........eeeeee..........eeeee...eeeeeee..hhhhheeeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhhhh....eeee....eeeee......eeeeee.....eeeeee...ee.....eee......eeeeee........eeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.27  PDB: A:1352-1356 [INCOMPLETE]    -------------------Exon 1.29              Exon 1.30  PDB: A:1380-1417 (gaps)    Exon 1.31  PDB: A:1418-1447   ------------Exon 1.33  PDB: A:1460-1495         ------------------------------------------------------Exon 1.35    -------Exon 1.37          Exon 1.38  PDB: A:1589-1666 UniProt: 1589-1685 [INCOMPLETE]                    Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------Exon 1.28            -----------------------------------------------------------------------------------------Exon 1.32     ----------------------------------Exon 1.34  PDB: A:1495-1550 UniProt: 1495-1550          -----------Exon 1.36------------------------------------------------------------------------------------------------ Transcript 1 (2)
                2y25 A 1352 IDPFT----------------------------------------------------------GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
                                |    -         -         -         -         -         -   |  1363      1373      1383      1393      1403     |1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663   
                             1356                                                       1357                                          1403  1409

Chain B from PDB  Type:PROTEIN  Length:314
 aligned with MYOM1_HUMAN | P52179 from UniProtKB/Swiss-Prot  Length:1685

    Alignment length:331
                                  1345      1355      1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665 
         MYOM1_HUMAN   1336 DVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----------------..ee....eeeee...eeeee..ee......eeeeee..ee...............eee........eeeeeeeee..eeeeeeeee...hhhhhhhhhhhhhhhh....eeee...eeeeeee.........eeeee..ee........eeee..eeeeeee..hhhhheeeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.eeee....eeeee....ee..eeee.....eeeeee..ee.........eee...eee.ee...hhhhheeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------N--------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.-------------------Exon 1.29              Exon 1.30  PDB: B:1380-1417           Exon 1.31  PDB: B:1418-1447   ------------Exon 1.33  PDB: B:1460-1495         ------------------------------------------------------Exon 1.35    -------Exon 1.37          Exon 1.38  PDB: B:1589-1666 UniProt: 1589-1685 [INCOMPLETE]                    Transcript 1 (1)
           Transcript 1 (2) -Exon 1.28            -----------------------------------------------------------------------------------------Exon 1.32     ----------------------------------Exon 1.34  PDB: B:1495-1550 UniProt: 1495-1550          -----------Exon 1.36------------------------------------------------------------------------------------------------ Transcript 1 (2)
                2y25 B 1353 DPFT-----------------GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
                               |     -         - |    1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665 
                            1356              1357

Chain C from PDB  Type:PROTEIN  Length:310
 aligned with MYOM1_HUMAN | P52179 from UniProtKB/Swiss-Prot  Length:1685

    Alignment length:373
                                  1303      1313      1323      1333      1343      1353      1363      1373      1383      1393      1403      1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663   
         MYOM1_HUMAN   1294 IDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----------------------------------------------------------..eeeeeeeeeee...eeeeeeeee......eeeeee..eee.....-----..eeeee..........eeeeee....ee..ee...hhhhhhhhhhhhhhhhh.....eeee...eeeeeee........eeeeee..........eeeee...eeeeeee..hhhhheeeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhhhh....eeee....eeeee......eeeeee.....eeeeee...ee.....eeeeee...eeeeee...hhhhheeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.27  PDB: C:1352-1356 [INCOMPLETE]    -------------------Exon 1.29              Exon 1.30  PDB: C:1380-1417 (gaps)    Exon 1.31  PDB: C:1418-1447   ------------Exon 1.33  PDB: C:1460-1495         ------------------------------------------------------Exon 1.35    -------Exon 1.37          Exon 1.38  PDB: C:1589-1666 UniProt: 1589-1685 [INCOMPLETE]                    Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------Exon 1.28            -----------------------------------------------------------------------------------------Exon 1.32     ----------------------------------Exon 1.34  PDB: C:1495-1550 UniProt: 1495-1550          -----------Exon 1.36------------------------------------------------------------------------------------------------ Transcript 1 (2)
                2y25 C 1352 IDPFT----------------------------------------------------------GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-----GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
                                |    -         -         -         -         -         -   |  1363      1373      1383      1393      1403     |1413      1423      1433      1443      1453      1463      1473      1483      1493      1503      1513      1523      1533      1543      1553      1563      1573      1583      1593      1603      1613      1623      1633      1643      1653      1663   
                             1356                                                       1357                                          1403  1409

Chain D from PDB  Type:PROTEIN  Length:314
 aligned with MYOM1_HUMAN | P52179 from UniProtKB/Swiss-Prot  Length:1685

    Alignment length:331
                                  1345      1355      1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665 
         MYOM1_HUMAN   1336 DVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----------------..ee....eeeee...eeeee..ee......eeeeee..ee...............eee........eeeeeeeee..eeeeeeeee...hhhhhhhhhhhhhhhh....eeee...eeeeeee.........eeeee..ee........eeee..eeeeeee..hhhhheeeeeeee....eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhh.eeee....eeeee....ee..eeee.....eeeeee..ee.........eee...eee.ee...hhhhheeeeeeeee..eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------N--------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.-------------------Exon 1.29              Exon 1.30  PDB: D:1380-1417           Exon 1.31  PDB: D:1418-1447   ------------Exon 1.33  PDB: D:1460-1495         ------------------------------------------------------Exon 1.35    -------Exon 1.37          Exon 1.38  PDB: D:1589-1666 UniProt: 1589-1685 [INCOMPLETE]                    Transcript 1 (1)
           Transcript 1 (2) -Exon 1.28            -----------------------------------------------------------------------------------------Exon 1.32     ----------------------------------Exon 1.34  PDB: D:1495-1550 UniProt: 1495-1550          -----------Exon 1.36------------------------------------------------------------------------------------------------ Transcript 1 (2)
                2y25 D 1353 DPFT-----------------GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 1666
                               |     -         - |    1365      1375      1385      1395      1405      1415      1425      1435      1445      1455      1465      1475      1485      1495      1505      1515      1525      1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645      1655      1665 
                            1356              1357

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2Y25)

(no "CATH Domain" information available for 2Y25)

(no "Pfam Domain" information available for 2Y25)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (MYOM1_HUMAN | P52179)

molecular function
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0008307	structural constituent of muscle	The action of a molecule that contributes to the structural integrity of a muscle fiber.
biological process
	GO:0006936	muscle contraction	A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
	GO:0002230	positive regulation of defense response to virus by host	Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
	GO:0098779	positive regulation of macromitophagy in response to mitochondrial depolarization	The macromitophagy process that is triggered by a detection of the loss of mitochondrial membrane potential.
	GO:0098792	xenophagy	The macroautophagy process in which a region of cytoplasm containing an intracellular pathogen or some part of an intracellular pathogen (e.g. viral capsid) is enclosed in a double membrane bound autophagosome, which then fuses with the lysosome leading to degradation of the contents.
cellular component
	GO:0031430	M band	The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0032982	myosin filament	A protein complex containing myosin heavy chains, plus associated light chains and other proteins, in which the myosin heavy chains are arranged into a filament.
	GO:0030017	sarcomere	The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
	GO:0005863	striated muscle myosin thick filament	Bipolar filaments formed of polymers of a muscle-specific myosin II isoform, found in the middle of sarcomeres in myofibrils.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2y25)

	Sites
(no "Sites" information available for 2y25)

	Cis Peptide Bonds
		Asp A:1599 - Pro A:1600	[ RasMol ]
		Asp B:1408 - Gly B:1409	[ RasMol ]
		Asp B:1599 - Pro B:1600	[ RasMol ]
		Asp C:1599 - Pro C:1600	[ RasMol ]
		Asp D:1408 - Gly D:1409	[ RasMol ]
		Asp D:1599 - Pro D:1600	[ RasMol ]
		Pro A:1354 - Phe A:1355	[ RasMol ]
		Pro C:1354 - Phe C:1355	[ RasMol ]
		Thr B:1482 - Tyr B:1483	[ RasMol ]
		Thr D:1482 - Tyr D:1483	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2y25
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	MYOM1_HUMAN \| P52179
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	MYOM1_HUMAN \| P52179
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	MYOM1_HUMAN \| P52179	:	2r15 2y23 3rbs 5fm4 5fm5 5fm8

2y23	CRYSTAL STRUCTURE OF THE MYOMESIN DOMAINS MY9-MY11

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (2, 2)

Cis Peptide Bonds (10, 10)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (2, 6)

PROSITE Motifs (0, 0)

Exons (12, 48)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File