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(-) Description

Authors :  L. Banci, I. Bertini, S. Ciofi-Baffoni, I. P. Gerothanassis, I. Leontari, M. Martinelli, S. Wang, Structural Proteomics In Europe (Spine)
Date :  11 Jul 07  (Deposition) - 28 Aug 07  (Release) - 24 Feb 09  (Revision)
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (31x)
Keywords :  Copper Protein, Thioredoxin Fold, Metal Transport, Structural Genomics, Spine2-Complexes, Structural Proteomics In Europe, Spine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  L. Banci, I. Bertini, S. Ciofi-Baffoni, I. P. Gerothanassis, I. Leontari, M. Martinelli, S. Wang
A Structural Characterization Of Human Sco2
Structure V. 15 1132 2007
PubMed-ID: 17850752  |  Reference-DOI: 10.1016/J.STR.2007.07.011
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21DE3 GOLD
    Expression System Taxid562
    Expression System VectorPETG-30A
    Expression System Vector TypePLASMID
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

NMR Structure (31x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CU11Ligand/IonCOPPER (I) ION

(-) Sites  (1, 1)

NMR Structure (1, 1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RLI)

(-) Cis Peptide Bonds  (3, 3)

NMR Structure
1Thr A:99 -Gly A:100
2Ser A:263 -Val A:264
3Val A:264 -Leu A:265

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 10)

NMR Structure (10, 10)
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_074010R112WSCO2_HUMANUnclassified (MYP6)370130010AR112W
02UniProtVAR_070053R114HSCO2_HUMANDisease (MYP6)145100473AR114H
03UniProtVAR_074011R120WSCO2_HUMANUnclassified (MYP6)375954523AR120W
04UniProtVAR_070054C133YSCO2_HUMANDisease (CEMCOX1)28937868AC133Y
05UniProtVAR_008874E140KSCO2_HUMANDisease (MYP6)74315511AE140K
06UniProtVAR_013238R171WSCO2_HUMANDisease (CEMCOX1)28937598AR171W
07UniProtVAR_076281G193SSCO2_HUMANDisease (LS)759452074AG193S
08UniProtVAR_008875S225FSCO2_HUMANDisease (CEMCOX1)80358232AS225F
09UniProtVAR_076282M258TSCO2_HUMANDisease (LS)  ---AM258T
10UniProtVAR_051912A259VSCO2_HUMANDisease (MYP6)8139305AA259V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RLI)

(-) Exons   (1, 1)

NMR Structure (1, 1)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with SCO2_HUMAN | O43819 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:170
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266
               SCOP domains d2rlia_ A: automated matches                                                                                                                                               SCOP domains
               CATH domains 2rliA00 A:97-266 Glutaredoxin                                                                                                                                              CATH domains
               Pfam domains ---SCO1-SenC-2rliA01 A:100-245                                                                                                                       --------------------- Pfam domains
         Sec.struct. author Sec.struct. author
                 SAPs(SNPs) ---------------W-H-----W------------Y------K------------------------------W---------------------S-------------------------------F--------------------------------TV------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.4c  PDB: A:97-266 UniProt: 1-271 [INCOMPLETE]                                                                                                                       Transcript 1
                                   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (18, 18)

NMR Structure(hide GO term definitions)
Chain A   (SCO2_HUMAN | O43819)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006878    cellular copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell.
    GO:0055070    copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
    GO:0006825    copper ion transport    The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0001654    eye development    The process whose specific outcome is the progression of the eye over time, from its formation to the mature structure. The eye is the organ of sight.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0003012    muscle system process    A organ system process carried out at the level of a muscle. Muscle tissue is composed of contractile cells or fibers.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008535    respiratory chain complex IV assembly    The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms.
    GO:0022904    respiratory electron transport chain    A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0014823    response to activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an activity stimulus.
cellular component
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0030016    myofibril    The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.


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